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X-ray Structure of the R70D PI-PLC enzyme: Insight into the role of calcium and surrounding amino acids on active site geometry and catalysis.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9.5 298 30% PEG-3000, 0.2M NH4Cl, 20 mM CHES Buffer, pH 9.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.5 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.221 α = 90 b = 147.725 β = 90 c = 96.562 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 4 2001-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 0.99 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.107 43.437 37925 37903
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.107 43.3 36951 3711 99.67 0.2233 0.2233 0.2397 0.2464 RANDOM 19.493
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.999 1.952 1.047
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.152 r_dihedral_angle_3_deg 16.664 r_dihedral_angle_4_deg 7.699 r_dihedral_angle_1_deg 7.613 r_scangle_it 3.062 r_scbond_it 2.023 r_angle_refined_deg 1.546 r_mcangle_it 1.397 r_angle_other_deg 0.957 r_mcbond_it 0.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.152 r_dihedral_angle_3_deg 16.664 r_dihedral_angle_4_deg 7.699 r_dihedral_angle_1_deg 7.613 r_scangle_it 3.062 r_scbond_it 2.023 r_angle_refined_deg 1.546 r_mcangle_it 1.397 r_angle_other_deg 0.957 r_mcbond_it 0.84 r_xyhbond_nbd_other 0.517 r_symmetry_hbond_refined 0.319 r_xyhbond_nbd_refined 0.29 r_symmetry_vdw_other 0.264 r_symmetry_vdw_refined 0.262 r_nbd_refined 0.258 r_nbd_other 0.202 r_mcbond_other 0.158 r_chiral_restr 0.107 r_nbtor_other 0.088 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbtor_refined r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4836 Nucleic Acid Atoms Solvent Atoms 228 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling XTALVIEW refinement