1T4X

The first left-handed RNA structure of (CGCGCG)2, Z-RNA, NMR, 12 structures, determined in high salt


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESYRNA (2-3 mM) in buffer containing 150 mM NaCl, 10 mM sodium phosphate pH 6.5, 0.1 mM EDTA and 6M NaClO4D2O (99.98%)6M NaClO46.5ambient303
2DQF-COSYRNA (2-3 mM) in buffer containing 150 mM NaCl, 10 mM sodium phosphate pH 6.5, 0.1 mM EDTA and 6M NaClO4D2O (99.98%)6M NaClO46.5ambient303
331P-1H HETCORRNA (2-3 mM) in buffer containing 150 mM NaCl, 10 mM sodium phosphate pH 6.5, 0.1 mM EDTA and 6M NaClO4D2O (99.98%)6M NaClO46.5ambient303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianUNITYPLUS500
NMR Refinement
MethodDetailsSoftware
molecular dynamics with NMR restraintsNMR refinement using X-PLOR, NOE intra-residue distances 120, NOE inter-residue distances 112, Dihedral angle restraints 100, Watson-Crick pair distances 18, Planarity of base pairs - 6. Total restraints/residue: 30VNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations,structures with the lowest energy
Conformers Calculated Total Number50
Conformers Submitted Total Number12
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMR6.1BVarian
2data analysisFelix2000Accelrys
3structure solutionCYANA1.0Guentert
4refinementX-PLOR3.851Brunger