☰ Navigation Tabs
Crystal Structure Of Sea Bream Transthyretin in complex with thyroxine At 1.9A Resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 296 PEG 1550 MME, sodium citrate, ammonium sulphate, nickel sulphate. Crystals were soaked in thyroxine, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.13 42.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.455 α = 90 b = 58.455 β = 90 c = 140.116 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 96 0.047 35460
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 89.7 0.446
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.9 19.84 30446 30446 3336 95.27 0.1829 0.1829 0.17928 0.2003 0.2163 RANDOM 17.607
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.53 -0.53 1.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.298 r_dihedral_angle_1_deg 4.038 r_scangle_it 2.71 r_angle_other_deg 1.755 r_scbond_it 1.636 r_angle_refined_deg 1.404 r_mcangle_it 1.348 r_mcbond_it 0.722 r_symmetry_vdw_other 0.333 r_symmetry_vdw_refined 0.277
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.298 r_dihedral_angle_1_deg 4.038 r_scangle_it 2.71 r_angle_other_deg 1.755 r_scbond_it 1.636 r_angle_refined_deg 1.404 r_mcangle_it 1.348 r_mcbond_it 0.722 r_symmetry_vdw_other 0.333 r_symmetry_vdw_refined 0.277 r_nbd_refined 0.237 r_nbd_other 0.218 r_xyhbond_nbd_refined 0.204 r_symmetry_hbond_refined 0.19 r_chiral_restr 0.083 r_nbtor_other 0.069 r_xyhbond_nbd_other 0.053 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3529 Nucleic Acid Atoms Solvent Atoms 344 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing