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Crystal structure of a truncated form of yeast copper thionein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 293 250 mM KH2PO4, 1mM LiBr, pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.6 52.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.167 α = 90 b = 62.167 β = 90 c = 62.167 γ = 90
Symmetry Space Group P 43 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-11-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 0.91920 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.44 27.84 100 0.07 0.07 9.3 21.8 7922 7922 9.155
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.44 1.52 100 0.358 0.358 2.1 22.4 1117
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.44 27.84 7239 7239 634 100 0.14687 0.14687 0.14482 0.1501 0.17072 RANDOM 12.889
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.032 r_sphericity_free 7.879 r_dihedral_angle_1_deg 6.006 r_scbond_it 5.003 r_sphericity_bonded 4.623 r_mcangle_it 3.519 r_rigid_bond_restr 2.684 r_mcbond_it 2.493 r_angle_other_deg 2.237 r_angle_refined_deg 2.073
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.032 r_sphericity_free 7.879 r_dihedral_angle_1_deg 6.006 r_scbond_it 5.003 r_sphericity_bonded 4.623 r_mcangle_it 3.519 r_rigid_bond_restr 2.684 r_mcbond_it 2.493 r_angle_other_deg 2.237 r_angle_refined_deg 2.073 r_symmetry_hbond_refined 0.337 r_symmetry_vdw_other 0.323 r_nbd_other 0.27 r_xyhbond_nbd_refined 0.244 r_nbd_refined 0.214 r_chiral_restr 0.143 r_symmetry_vdw_refined 0.138 r_gen_planes_other 0.108 r_nbtor_other 0.095 r_bond_other_d 0.065 r_gen_planes_refined 0.048 r_bond_refined_d 0.024
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 257 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SOLVE phasing RESOLVE phasing