☰ Navigation Tabs
RUBREDOXIN FROM DESULFOVIBRIO VULGARIS REFINED ANISOTROPICALLY AT 0.92 ANGSTROMS RESOLUTION
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8RXN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 pH 4.5
Crystal Properties Matthews coefficient Solvent content 1.64 25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 19.97 α = 90 b = 41.45 β = 108.3 c = 24.41 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE MARRESEARCH MIRRORS 1988-08-02 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 EMBL/DESY, HAMBURG X31
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.92 20 98.5 0.031 0.031 10 3.7 26124 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 0.92 0.94 98 0.148 0.148 3.1 3.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MODEL KNOWN (8RXN) 8RXN 0.92 20 48061 98.5 0.0731
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 12 524 1426.6
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.24 s_zero_chiral_vol 0.153 s_approx_iso_adps 0.102 s_similar_adp_cmpnt 0.04 s_angle_d 0.038 s_similar_dist 0.031 s_bond_d 0.021 s_rigid_bond_adp_cmpnt 0.007 s_from_restr_planes s_anti_bump_dis_restr
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 716 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms 11
Software Software Software Name Purpose SHELXL-97 model building SHELXL-97 refinement MOSFLM data reduction Agrovata data scaling SHELXL-97 phasing