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NMR structure determination of the self complementary DNA Dodecamer CGCGAATT*CGCG in which a ribose is inserted between the 3'-OH of T8 and the 5'-phosphate group of C9
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
2D NOESY
3.4mM CGCGAATT*CGCG
100% D2O
no salt added
7.2
ambient
298
2
2D TOCSY
3.4mM CGCGAATT*CGCG
100% D2O
no salt added
7.2
ambient
298
3
DQF-COSY
3.4mM CGCGAATT*CGCG
100% D2O
no salt added
7.2
ambient
298
4
2D NOESY
3.4mM CGCGAATT*CGCG
100% D2O
no salt added
7.2
ambient
283
5
2D NOESY
3.4mM CGCGAATT*CGCG, 90% H2O, 10% D2O
90% H2O/10% D2O
no salt added
7.2
ambient
283
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Varian
UNITY
500
NMR Refinement
Method
Details
Software
torsion angle dynamics followed by a molecular dynamics refinement