1QXB

NMR structure determination of the self complementary DNA Dodecamer CGCGAATT*CGCG in which a ribose is inserted between the 3'-OH of T8 and the 5'-phosphate group of C9


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY3.4mM CGCGAATT*CGCG100% D2Ono salt added7.2ambient298
22D TOCSY3.4mM CGCGAATT*CGCG100% D2Ono salt added7.2ambient298
3DQF-COSY3.4mM CGCGAATT*CGCG100% D2Ono salt added7.2ambient298
42D NOESY3.4mM CGCGAATT*CGCG100% D2Ono salt added7.2ambient283
52D NOESY3.4mM CGCGAATT*CGCG, 90% H2O, 10% D2O90% H2O/10% D2Ono salt added7.2ambient283
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianUNITY500
NMR Refinement
MethodDetailsSoftware
torsion angle dynamics followed by a molecular dynamics refinementVNMR
NMR Ensemble Information
Conformer Selection Criteria
Conformers Calculated Total Number
Conformers Submitted Total Number1
Representative Model1 (minimized average structure)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMR6.1bVarian
2processingFelix97.00Biosym Technologies
3data analysisFelix97.00Biosym Technologies
4structure solutionX-PLOR3.851Brnger AT
5refinementX-PLOR3.851Brnger AT