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RAT OESTROGEN RECEPTOR BETA LIGAND-BINDING DOMAIN IN COMPLEX WITH ANTAGONIST RALOXIFENE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ERE PDB ENTRY 1ERE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.8 7.5% (W/V) PEG 4000, 0.1M AMMONIUM ACETATE, 3% (W/V) DIMETHYLFORMAMIDE, 0.025M SODIUM ACETATE, PH 4.8
Crystal Properties Matthews coefficient Solvent content 2.87 57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.55 α = 90 b = 67.55 β = 90 c = 148.2 γ = 90
Symmetry Space Group P 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1997-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 25 99 0.077 8.5 4 16904 -3 32
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.29 98.7 0.467 2 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ERE 2.25 25 16870 1691 99 0.204 0.201 0.263 0.2575 RANDOM 47
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.592 3.592 -6.691
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 32.9 p_staggered_tor 18.4 p_scangle_it 3.754 p_mcangle_it 3.43 p_scbond_it 2.516 p_mcbond_it 2.183 p_planar_tor 2 p_multtor_nbd 0.335 p_singtor_nbd 0.182 p_xyhbond_nbd 0.166
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 32.9 p_staggered_tor 18.4 p_scangle_it 3.754 p_mcangle_it 3.43 p_scbond_it 2.516 p_mcbond_it 2.183 p_planar_tor 2 p_multtor_nbd 0.335 p_singtor_nbd 0.182 p_xyhbond_nbd 0.166 p_chiral_restr 0.136 p_planar_d 0.044 p_angle_d 0.038 p_bond_d 0.014 p_plane_restr 0.012 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1750 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing