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The A251C:S430C double mutant of flavocytochrome c3 from Shewanella frigidimarina
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QJD pdb id 1qjd
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 277 PEG 8000, TrisHCl, NaCl, fumarate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.68 54.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.29 α = 90 b = 91.885 β = 91.5 c = 78.31 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-05-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 0.9750 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 24 92.2 0.058 14.31 84374 77814 20.607
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 95.5 0.345 2.34 8004
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb id 1qjd 1.6 24 73913 3884 92.24 0.15733 0.15526 0.1578 0.19711 0.2005 RANDOM 20.607
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.62 0.06 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.039 r_scangle_it 3.403 r_scbond_it 2.232 r_angle_refined_deg 1.489 r_mcangle_it 1.292 r_mcbond_it 0.769 r_symmetry_hbond_refined 0.312 r_symmetry_vdw_refined 0.266 r_nbd_refined 0.25 r_xyhbond_nbd_refined 0.136
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.039 r_scangle_it 3.403 r_scbond_it 2.232 r_angle_refined_deg 1.489 r_mcangle_it 1.292 r_mcbond_it 0.769 r_symmetry_hbond_refined 0.312 r_symmetry_vdw_refined 0.266 r_nbd_refined 0.25 r_xyhbond_nbd_refined 0.136 r_chiral_restr 0.111 r_bond_refined_d 0.014 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4190 Nucleic Acid Atoms Solvent Atoms 1228 Heterogen Atoms 235
Software Software Software Name Purpose DENZO data reduction TRUNCATE data reduction AMoRE phasing REFMAC refinement CCP4 data scaling