NMR structure of the substrate binding domain of DnaK bound to the peptide NRLLLTG
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D_13C-separated_NOESY | 0.66 mM DnaK(393-507); 3.3 mM NRLLLTG; 10 mM sodium phosphate buffer, pH 7.4 | 90% H2O/10% D2O | 10 mM sodium phosphate | 7.4 | ambient | 303 | |
| 2 | 3D_15N-separated_NOESY | 0.66 mM DnaK(393-507); 3.3 mM NRLLLTG; 10 mM sodium phosphate buffer, pH 7.4 | 90% H2O/10% D2O | 10 mM sodium phosphate | 7.4 | ambient | 303 | |
| 3 | H(C)CH_TOCSY | 0.66 mM DnaK(393-507); 3.3 mM NRLLLTG; 10 mM sodium phosphate buffer, pH 7.4 | 90% H2O/10% D2O | 10 mM sodium phosphate | 7.4 | ambient | 303 | |
| 4 | (H)CCH_TOCSY | 0.66 mM DnaK(393-507); 3.3 mM NRLLLTG; 10 mM sodium phosphate buffer, pH 7.4 | 90% H2O/10% D2O | 10 mM sodium phosphate | 7.4 | ambient | 303 | |
| 5 | 15N FILTERED/EDITED NOESY | 0.66 mM DnaK(393-507); 3.3 mM NRLLLTG; 10 mM sodium phosphate buffer, pH 7.4 | 90% H2O/10% D2O | 10 mM sodium phosphate | 7.4 | ambient | 303 | |
| 6 | 13C FILTERED/EDITED NOESY | 0.66 mM DnaK(393-507); 3.3 mM NRLLLTG; 10 mM sodium phosphate buffer, pH 7.4 | 90% H2O/10% D2O | 10 mM sodium phosphate | 7.4 | ambient | 303 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 800 |
| 2 | Bruker | AMX | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | VNMR | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with acceptable covalent geometry,structures with the least restraint violations,structures with the lowest energy |
| Conformers Calculated Total Number | 60 |
| Conformers Submitted Total Number | 15 |
| Representative Model | 1 (closest to the average) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | VNMR | 2.6 | varian |
| 2 | processing | VNMR | 2.6 | varian |
| 3 | processing | NMRPipe | Delaglio | |
| 4 | data analysis | XEASY | 3.2 | Wuthrich |
| 5 | structure solution | ARIA/(CNS) | 1.0 | Nilges |
| 6 | refinement | ARIA/(CNS) | 1.0 | Nilges |














