1Q1P

E-Cadherin activation


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
3.6466.16

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 129.204α = 90
b = 48.601β = 113.93
c = 58.669γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH2002-12-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEELLIOTT GX-211.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.1837.4799.80.1318.33.156325324

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1FF5.pdb3.220563253242561000.261550.258670.30484RANDOM19.3
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.85-2.22-2.011.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg22.4
r_scangle_it4.501
r_dihedral_angle_1_deg3.775
r_scbond_it2.694
r_mcangle_it2.002
r_angle_refined_deg1.877
r_angle_other_deg1.514
r_mcbond_it1.134
r_symmetry_hbond_refined0.496
r_symmetry_vdw_other0.333
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg22.4
r_scangle_it4.501
r_dihedral_angle_1_deg3.775
r_scbond_it2.694
r_mcangle_it2.002
r_angle_refined_deg1.877
r_angle_other_deg1.514
r_mcbond_it1.134
r_symmetry_hbond_refined0.496
r_symmetry_vdw_other0.333
r_nbd_refined0.332
r_nbd_other0.301
r_xyhbond_nbd_refined0.285
r_metal_ion_refined0.279
r_symmetry_vdw_refined0.248
r_xyhbond_nbd_other0.221
r_symmetry_hbond_other0.178
r_chiral_restr0.158
r_bond_refined_d0.012
r_gen_planes_refined0.011
r_gen_planes_other0.007
r_bond_other_d0.003
r_dihedral_angle_2_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_nbtor_other
r_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1628
Nucleic Acid Atoms
Solvent Atoms233
Heterogen Atoms3

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
AMoREphasing