1PLO

TRANSFORMING GROWTH FACTOR-BETA TYPE II RECEPTOR EXTRACELLULAR DOMAIN


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESY1mM ecTbR2 U-15N, 25mM sodium acetate, 25mM NaCl, 95% H2O, 5% D2O95% H2O/5% D2O25mM sodium acetate, 25mM NaCl, pH 5.55.5ambient300
23D_13C-separated_NOESY1mM ecTbR2 U-15N, 13C, 25mM sodium acetate, 25mM NaCl99.99% D2O25mM sodium acetate, 25mM NaCl5.1ambient300
34D_13C-separated_NOESY1mM ecTbR2 U-15N, 13C, 25mM sodium acetate, 25mM NaCl99.99% D2O25mM sodium acetate, 25mM NaCl5.1ambient300
43D 15N edited, 13C-edited 1H-1H noesy1mM ecTbR2 U-15N, 13C, 25mM sodium acetate, 25mM NaCl, 95% H2O, 5% D2O95% H2O/5% D2O25mM sodium acetate, 25mM NaCl, pH 5.55.5ambient300
53D 15N-edited,15N-edited 1H-1H noesy1mM ecTbR2 U-15N, 25mM sodium acetate, 25mM NaCl, 95% H2O, 5% D2O95% H2O/5% D2O25mM sodium acetate, 25mM NaCl, pH 5.55.5ambient300
61H-15H 1-bond residual dipolar coupling (2D IPAP-HSQC)1mM ecTbR2 U-15N, 25mM sodium acetate, 25mM NaCl, 4% (w/v) 1,2-di-O-hexyl-sn-glycero-3-phosphocholine (6-O-PC) and 1,2-di-O-tetradecyl-sn-glycero-3-phosphocholine (14-O-PC) mixed in a molar ratio of 1:3, 95% H2O, 5% D2O95% H2O/5% D2O25mM sodium acetate, 25mM NaCl5.5ambient313
713C-13CO residual dipolar coupling (3D (HA)CA(CO)NH1mM ecTbR2 U-15N, 13C, 25mM sodium acetate, 25mM NaCl, 4% (w/v) 1,2-di-O-hexyl-sn-glycero-3-phosphocholine (6-O-PC) and 1,2-di-O-tetradecyl-sn-glycero-3-phosphocholine (14-O-PC) mixed in a molar ratio of 1:3, 95% H2O, 5% D2O95% H2O/5% D2O25mM sodium acetate, 25mM NaCl5.5ambient313
813Calpha-13CO residual dipolar coupling (3D Ca-coupled HNCO)1mM ecTbR2 U-15N, 13C, 25mM sodium acetate, 25mM NaCl, 4% (w/v) 1,2-di-O-hexyl-sn-glycero-3-phosphocholine (6-O-PC) and 1,2-di-O-tetradecyl-sn-glycero-3-phosphocholine (14-O-PC) mixed in a molar ratio of 1:3, 95% H2O, 5% D2O95% H2O/5% D2O25mM sodium acetate, 25mM NaCl5.5ambient313
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX600
2BrukerAVANCE500
NMR Refinement
MethodDetailsSoftware
substructure distance geometry, full structure distance geometry-simulated annealing; torsion angle dynamicsstructures are based on a total of 1583 constraints, 1168 are NOE distance, 138 are dihedredral angle, 58 are 3JHNHa coupling constant, 219 are residual dipolar couplings,XPLOR_NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with acceptable covalent geometry, structures with favorable non-bond energy, structures with the least restraint violations, structures with the lowest energy
Conformers Calculated Total Number50
Conformers Submitted Total Number10
Representative Model1 (fewest violations, lowest energy)
Additional NMR Experimental Information
DetailsThis structure was determined by refining simultaneously against NOE, J-coupling, dihedral angle, and residual dipolar coupling constraints
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementXPLOR_NIH1.06Clore, G.M., Kuszewski, J., Schwieters, C.D., Tjandra, N.