1P7E

GB3 solution structure obtained by refinement of X-ray structure with dipolar couplings


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D IPAP [15N,1H]-HSQC25 mM NaH2PO4/Na2HPO4, 0.2 mg/mL NaN3, 1.5 mM GB3 protein and aligning media0.056.5ambient300
23D CT(H)CA(CO)NH25 mM NaH2PO4/Na2HPO4, 0.2 mg/mL NaN3, 1.5 mM GB3 protein and aligning media0.056.5ambient300
313C-coupled 3D HNCO25 mM NaH2PO4/Na2HPO4, 0.2 mg/mL NaN3, 1.5 mM GB3 protein and aligning media0.056.5ambient300
4quantitative J-correlation 3D TROSY-HNCO25 mM NaH2PO4/Na2HPO4, 0.2 mg/mL NaN3, 1.5 mM GB3 protein and aligning media0.056.5ambient300
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDMX600
2BrukerDRX800
NMR Refinement
MethodDetailsSoftware
simulated annealingGB3 solution structure obtained by refinement of the X-ray structure of GB3 (1IGD) with C(alpha)-C', C'-N and C(alpha)-H(alpha) dipolar couplings measured in five aligning media (bicelle, PEG, pf1 phage, negatively and positively charged polyacrylamide gels). HN is placed at the position that yields best agreement with the N-H dipolar couplings. Dipolar couplings originating on residues 10-11, 24-26, 39-41 and the N- and C-terminal residues were excluded, resulting in identity with the X-ray structure for these residues. Less than five N-H couplings could be obtained for residues Q2, E15, E27, N35, N37, and Y45 and for these residues as well as the excluded ones HN is placed on a line that bisects the C'(i-1)-N(i)-C(alpha,i) angle.DYNAMO
NMR Ensemble Information
Conformer Selection CriteriaBest agreement with dipolar constraints
Conformers Calculated Total Number20
Conformers Submitted Total Number1
Representative Model1 (fewest violations)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionDYNAMO2.1Delaglio, F.
2refinementDYNAMO2.1Delaglio, F.