Experiment: 1P3H

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	Other		THE E.COLI GROES STRUCTURE WITH AMINO ACIDS DIFFERING FROM M.TUBERCULOSIS CHAPERONIN 10 TRUNCATED TO ALANINES

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5.4	294	MPD, sodium acetate, calcium chloride, pH 5.4, VAPOR DIFFUSION, SITTING DROP, temperature 294K

Crystal Properties
Matthews coefficient	Solvent content
2.67	53.66

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 76.46	α = 90
b = 87.93	β = 106.78
c = 124.39	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	IMAGE PLATE	MARRESEARCH	mirrors	1996-04-08	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SRS BEAMLINE PX7.2	1.488	SRS	PX7.2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.8	30	98	0.05	0.05	24.41	3.5	38321	38321			80.3

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	2.8	2.82	99.7		0.61	0.61	1.92	3.5	982

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	TEST SET OF REFLECTIONS NOT USED IN REFINEMENT BUT TO MONITOR R-FREE	THE E.COLI GROES STRUCTURE WITH AMINO ACIDS DIFFERING FROM M.TUBERCULOSIS CHAPERONIN 10 TRUNCATED TO ALANINES	2.8	30	36893	36893	1900	94.3	0.26	0.26	0.259	0.25	0.28	0.29	5% OF REFLECTIONS SELECTED IN THIN RESOLUTION SHELLS TO AVOID BIAS FROM NON-CRYSTALLOGRAPHIC SYMMETRY	75.8

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-2		11.2	-1.1		3.1

RMS Deviations
Key	Refinement Restraint Deviation
c_dihedral_angle_d	26.1
c_scangle_it	5.24
c_mcangle_it	4.76
c_scbond_it	3.64
c_mcbond_it	2.99
c_angle_deg	1.398
c_improper_angle_d	0.97
c_bond_d	0.011

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	10481
Nucleic Acid Atoms
Solvent Atoms	208
Heterogen Atoms	1

Software

Software
Software Name	Purpose
XDS	data scaling
TRUNCATE	data reduction
DM	model building
CNS	refinement
XDS	data reduction
CCP4	data scaling
DM	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.