X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.529115.0 % (V/V) glycerol, 25.5 % (w/V) polyethylene glycol 4000, 0.17 mol/L sodium acetate and 0.085 mol/L Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.0439.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.309α = 90
b = 58.309β = 90
c = 109.535γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH2002-08-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONLNLS BEAMLINE D03B-MX11.4538LNLSD03B-MX1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.13099.31152711527

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.1301094855499.20.135140.135140.133180.1763RANDOM12.479
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.060.06-0.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.249
r_scangle_it3.65
r_scbond_it2.26
r_angle_refined_deg1.618
r_mcangle_it1.521
r_angle_other_deg0.91
r_mcbond_it0.859
r_symmetry_vdw_other0.306
r_nbd_other0.25
r_nbd_refined0.218
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.249
r_scangle_it3.65
r_scbond_it2.26
r_angle_refined_deg1.618
r_mcangle_it1.521
r_angle_other_deg0.91
r_mcbond_it0.859
r_symmetry_vdw_other0.306
r_nbd_other0.25
r_nbd_refined0.218
r_xyhbond_nbd_refined0.207
r_symmetry_vdw_refined0.185
r_symmetry_hbond_refined0.173
r_nbtor_other0.121
r_chiral_restr0.1
r_bond_refined_d0.016
r_gen_planes_refined0.007
r_bond_other_d0.003
r_gen_planes_other0.003
r_dihedral_angle_2_deg
r_xyhbond_nbd_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1350
Nucleic Acid Atoms
Solvent Atoms198
Heterogen Atoms24

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
CCP4data scaling
AMoREphasing