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Human Adenine Phosphoribosyltransferase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 15.0 % (V/V) glycerol, 25.5 % (w/V) polyethylene glycol 4000, 0.17 mol/L sodium acetate and 0.085 mol/L Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.04 39.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.309 α = 90 b = 58.309 β = 90 c = 109.535 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2002-08-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 1.4538 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 99.3 11527 11527
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 30 10948 554 99.2 0.13514 0.13514 0.13318 0.1471 0.1763 0.1919 RANDOM 12.479
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.06 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.249 r_scangle_it 3.65 r_scbond_it 2.26 r_angle_refined_deg 1.618 r_mcangle_it 1.521 r_angle_other_deg 0.91 r_mcbond_it 0.859 r_symmetry_vdw_other 0.306 r_nbd_other 0.25 r_nbd_refined 0.218
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.249 r_scangle_it 3.65 r_scbond_it 2.26 r_angle_refined_deg 1.618 r_mcangle_it 1.521 r_angle_other_deg 0.91 r_mcbond_it 0.859 r_symmetry_vdw_other 0.306 r_nbd_other 0.25 r_nbd_refined 0.218 r_xyhbond_nbd_refined 0.207 r_symmetry_vdw_refined 0.185 r_symmetry_hbond_refined 0.173 r_nbtor_other 0.121 r_chiral_restr 0.1 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_dihedral_angle_2_deg r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1350 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement MAR345 data collection CCP4 data scaling AMoRE phasing