Three-dimensional structure in lipid micelles of the pediocin-like antimicrobial peptide sakacin P.
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | NOESY | 90% TFE,0.1% TFA, 10% D2O,1MM PEPTIDE | 2.8 | 298 | ||||
| 2 | TOCSY | 90% TFE,0.1% TFA, 10% D2O,1MM PEPTIDE | 2.8 | 298 | ||||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DRX | 500 |
| 2 | Bruker | DRX | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| MOLECULAR DYNAMICS/ SIMULATED ANNEALING | AMBER 6, SAN FRANCISCO, UNIVERSITY OF CALIFORNIA, 1999. | Amber |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | LEAST RESTRAIN VIOLATION AND OVERALL ENERGY |
| Conformers Calculated Total Number | 50 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (n/a) |
| Additional NMR Experimental Information | |
|---|---|
| Details | THE STRUCTURES WERE DETERMINED USING A COMBINATION OF 1H NMR SPECTROSCOPIC METHODS FOLLOWED BY DISTANCE GEOMETRY/SIMULATED ANNEALING CALCULATIONS. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | Amber | 6 | CASE, D.A., PEARLMAN, D.A., CALDWELL, III, J.C., ET AL. |
| 2 | structure solution | ARIA | ||
| 3 | structure solution | Amber | ||














