☰ Navigation Tabs
TRIVALENT ANTIBODY FRAGMENT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JEL PDB ENTRY 1JEL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 30% 2-PROPANOL, 0.2M NA CITRATE, 0.1M NA CACODYLATE PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.5 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.32 α = 90 b = 136.32 β = 90 c = 74.8 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 IMAGE PLATE MARRESEARCH MIRRORS 1994-11-02 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 96.6 0.053 0.053 35.1 2.8 33839 14.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 98.1 0.174 0.174 12 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1JEL 2 6 33679 1649 96.84 0.187 0.187 0.1835 0.23 0.2244 RANDOM 12.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 26.9 x_scangle_it 4.86 x_scbond_it 3.439 x_mcangle_it 2.636 x_mcbond_it 1.87 x_angle_deg 1.41 x_improper_angle_d 1.109 x_bond_d 0.008 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 26.9 x_scangle_it 4.86 x_scbond_it 3.439 x_mcangle_it 2.636 x_mcbond_it 1.87 x_angle_deg 1.41 x_improper_angle_d 1.109 x_bond_d 0.008 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3622 Nucleic Acid Atoms Solvent Atoms 477 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling X-PLOR model building X-PLOR refinement CCP4 data scaling X-PLOR phasing