SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D NOESY | 200 mM NaCl, 20 mM sodium phosphate (pH=7.0), 0.5 mM EDTA | water | 200 mM NaCl | 7.0 | 1 atm | 298 | |
| 2 | DQF-COSY | 200 mM NaCl, 20 mM sodium phosphate (pH=7.0), 0.5 mM EDTA | water | 200 mM NaCl | 7.0 | 1 atm | 298 | |
| 3 | HCCH-E.COSY | 200 mM NaCl, 20 mM sodium phosphate (pH=7.0), 0.5 mM EDTA | water | 200 mM NaCl | 7.0 | 1 atm | 298 | |
| 4 | HCCH-COSY | 200 mM NaCl, 20 mM sodium phosphate (pH=7.0), 0.5 mM EDTA | water | 200 mM NaCl | 7.0 | 1 atm | 298 | |
| 5 | HSQC | 200 mM NaCl, 20 mM sodium phosphate (pH=7.0), 0.5 mM EDTA | water | 200 mM NaCl | 7.0 | 1 atm | 298 | |
| 6 | HCCH-TOCSY | 200 mM NaCl, 20 mM sodium phosphate (pH=7.0), 0.5 mM EDTA | water | 200 mM NaCl | 7.0 | 1 atm | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 800 |
| 2 | Varian | UNITYPLUS | 600 |
| 3 | Varian | UNITY | 500 |
| 4 | GE | OMEGA | 500 |
| 5 | Varian | INOVA | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| Torsion angle + Cartesian simulated annealing. Then cartesian refinement with dipolar couplings. | Felix | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 30 |
| Conformers Submitted Total Number | 10 |
| Additional NMR Experimental Information | |
|---|---|
| Details | Dipolar couplings measured in 22 mg/ml bacteriophage Pf1. Structures superimposed over inner 8 bp. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | data analysis | Felix | 95 | Molec. Symulations |
| 2 | structure solution | CNS | 1.0 | Brunger et al. |
| 3 | refinement | CNS | 1.0 | Brunger et al. |
| 4 | iterative matrix relaxation | YARM | Lapham, J. | |














