X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2902.9M Sodium Formate, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties
Matthews coefficientSolvent content
2.8856.95

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 181.516α = 90
b = 184.53β = 90
c = 186.268γ = 90
Symmetry
Space GroupF 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100AREA DETECTORMARRESEARCHMirrors2001-03-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13200.08411.42.623102270
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
133.070.4462.25

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1MR732026609142589.730.245570.245570.242820.29506RANDOM62.715
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.87-0.79-1.07
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg24.784
r_dihedral_angle_1_deg8.342
r_angle_other_deg1.794
r_angle_refined_deg1.629
r_chiral_restr0.314
r_nbd_refined0.261
r_symmetry_vdw_other0.25
r_symmetry_vdw_refined0.241
r_nbd_other0.239
r_xyhbond_nbd_refined0.219
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg24.784
r_dihedral_angle_1_deg8.342
r_angle_other_deg1.794
r_angle_refined_deg1.629
r_chiral_restr0.314
r_nbd_refined0.261
r_symmetry_vdw_other0.25
r_symmetry_vdw_refined0.241
r_nbd_other0.239
r_xyhbond_nbd_refined0.219
r_symmetry_hbond_refined0.139
r_xyhbond_nbd_other0.124
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbtor_other
r_symmetry_hbond_other
r_mcbond_it
r_mcangle_it
r_scbond_it
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9370
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms302

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
REFMACrefinement