1LR8

Crystal structure of Fs1, the heparin-binding domain of follistatin, complexed with the heparin analogue D-myo-inositol hexasulphate (Ins6S)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.528915-25% PEG8000, 0.2-0.6 M Magnesium acetate, 0.1 M Sodium cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
1.9635.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 21.499α = 90
b = 38.208β = 90
c = 77.945γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4mirrors2001-06-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID290.9202ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.138.998.60.0813.5402619.44
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.12.1899.70.206

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1LR72.138.923394320019397.560.222160.222160.220710.25133RANDOM21.635
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.251.7-0.45
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg21.755
r_dihedral_angle_1_deg5.029
r_scangle_it4.947
r_scbond_it3.073
r_angle_refined_deg2.281
r_mcangle_it1.999
r_mcbond_it1.143
r_angle_other_deg0.972
r_symmetry_vdw_other0.317
r_symmetry_hbond_refined0.306
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg21.755
r_dihedral_angle_1_deg5.029
r_scangle_it4.947
r_scbond_it3.073
r_angle_refined_deg2.281
r_mcangle_it1.999
r_mcbond_it1.143
r_angle_other_deg0.972
r_symmetry_vdw_other0.317
r_symmetry_hbond_refined0.306
r_symmetry_vdw_refined0.299
r_nbd_refined0.259
r_nbd_other0.239
r_symmetry_hbond_other0.203
r_xyhbond_nbd_refined0.163
r_xyhbond_nbd_other0.159
r_chiral_restr0.105
r_bond_refined_d0.023
r_gen_planes_refined0.008
r_gen_planes_other0.003
r_bond_other_d0.001
r_nbtor_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms533
Nucleic Acid Atoms
Solvent Atoms21
Heterogen Atoms28

Software

Software
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
CNSrefinement
DENZOdata reduction
CNSphasing