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Retro-Diels-Alderase Catalytic antibody 9D9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 290 PEG4000, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.57 52.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.703 α = 90 b = 80.355 β = 90 c = 125.103 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE RIGAKU RAXIS IV Yale mirrors 1999-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 40 99 0.027 30.2 19718 45
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.53 98.3 0.116 10.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 38.35 18630 18630 1053 100 0.2391 0.23917 0.23532 0.3079 RANDOM 26.887
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.18 -0.74 -2.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 21.844 r_dihedral_angle_1_deg 7.934 r_scangle_it 6.68 r_scbond_it 5.465 r_mcangle_it 4.008 r_mcbond_it 2.728 r_angle_refined_deg 1.906 r_symmetry_vdw_refined 0.341 r_nbd_refined 0.286 r_symmetry_hbond_refined 0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 21.844 r_dihedral_angle_1_deg 7.934 r_scangle_it 6.68 r_scbond_it 5.465 r_mcangle_it 4.008 r_mcbond_it 2.728 r_angle_refined_deg 1.906 r_symmetry_vdw_refined 0.341 r_nbd_refined 0.286 r_symmetry_hbond_refined 0.27 r_chiral_restr 0.164 r_xyhbond_nbd_refined 0.15 r_bond_refined_d 0.018 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3352 Nucleic Acid Atoms Solvent Atoms 19 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALA data scaling CNS refinement MOSFLM data reduction CCP4 data scaling CNS phasing