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Helicobacter pylori cysteine rich protein B (hcpB)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 3 293 PEG 8000, sodium citrate, pH 3, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.4 48.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.36 α = 90 b = 51.36 β = 90 c = 205.941 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH 2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.9791, 0.9794, 0.8856 ESRF BM14 2 SYNCHROTRON ESRF BEAMLINE ID14-3 0.9330 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 30 95.6 12606 12049 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.95 2.001 95.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.95 30 12606 12049 1239 95.58 0.19232 0.18672 0.191 0.23844 0.2297 RANDOM 32.926
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.78 0.39 0.78 -1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.891 r_scangle_it 9.609 r_scbond_it 5.829 r_dihedral_angle_1_deg 3.741 r_mcangle_it 3.344 r_angle_refined_deg 2.438 r_mcbond_it 2.043 r_symmetry_vdw_refined 0.237 r_nbd_refined 0.234 r_chiral_restr 0.225
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.891 r_scangle_it 9.609 r_scbond_it 5.829 r_dihedral_angle_1_deg 3.741 r_mcangle_it 3.344 r_angle_refined_deg 2.438 r_mcbond_it 2.043 r_symmetry_vdw_refined 0.237 r_nbd_refined 0.234 r_chiral_restr 0.225 r_xyhbond_nbd_refined 0.225 r_symmetry_hbond_refined 0.22 r_bond_refined_d 0.04 r_gen_planes_refined 0.015 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_symmetry_vdw_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1029 Nucleic Acid Atoms Solvent Atoms 189 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling CNS refinement DENZO data reduction CNS phasing