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Structural plasticity in the eight-helix fold of a trematode hemoglobin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 277 ammonium sulfate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
Crystal Properties Matthews coefficient Solvent content 2.13 42.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.117 α = 90 b = 31.45 β = 95.5 c = 54.952 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1997-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 1.000 EMBL/DESY, HAMBURG X31
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 20 95.9 12210 12210
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.88 94.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.85 19 10861 10861 558 93.7 0.1642 0.1642 0.16133 0.22002 0.2121 RANDOM 14.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.03 -0.59 0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.374 r_scbond_it 11.844 r_scangle_it 11.207 r_mcangle_it 6.27 r_mcbond_it 5.266 r_dihedral_angle_1_deg 3.633 r_angle_refined_deg 1.116 r_symmetry_hbond_refined 0.27 r_nbd_refined 0.234 r_xyhbond_nbd_refined 0.195
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.374 r_scbond_it 11.844 r_scangle_it 11.207 r_mcangle_it 6.27 r_mcbond_it 5.266 r_dihedral_angle_1_deg 3.633 r_angle_refined_deg 1.116 r_symmetry_hbond_refined 0.27 r_nbd_refined 0.234 r_xyhbond_nbd_refined 0.195 r_symmetry_vdw_refined 0.162 r_chiral_restr 0.088 r_bond_refined_d 0.01 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1166 Nucleic Acid Atoms Solvent Atoms 180 Heterogen Atoms 58
Software Software Software Name Purpose EPMR phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling