1KFH
Solution Structure of alpha-Bungarotoxin by NMR Spectroscopy
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | NOESY | 4mM alpha-Bungarotoxin pH 5.79 at 288, 298, and 308 degrees K | 95% H2O/5% D2O | no buffers, pH adjusted w/HCl and NaOH | 5.79 | ambient | 298 | |
2 | DQF-COSY | 4mM alpha-Bungarotoxin pH 5.79 at 288, 298, and 308 degrees K | 95% H2O/5% D2O | no buffers, pH adjusted w/HCl and NaOH | 5.79 | ambient | 298 | |
3 | E-COSY | 4mM alpha-Bungarotoxin pH 5.79 | 99.9% D2O | no buffers, pH adjusted w/DCl and NaOD | 5.79 | ambient | 308 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | GE | GN | 500 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry, molecular dynamics, matrix relaxation | total number of restraints used: 657, Total number of NOE restraints: 588, Total number of dihedral angle restraints: 60, Used 9 hydrogen-bond restraints | MARDIGRAS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations,structures with the lowest energy |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 13 |
Representative Model | 4 (fewest violations) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 2D homonuclear techniques. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | iterative matrix relaxation | MARDIGRAS | 2.0 | Borgias, B. A., and James, T. L. |
2 | structure solution | VEMBED | 1.0 | Kuntz, I. D., Thomason, J. F., and Oshiro, C. M. |
3 | refinement | GROMOS | 87 4D version | van Schaik, R. C., and van Gunsteren, W. F. |