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PENICILLIN ACYLASE MUTANT WITH PHENYL PROPRIONIC ACID
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PNK PDB ENTRY 1PNK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 pH 7.20, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.04 39.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.781 α = 72.6 b = 64.226 β = 73.86 c = 64.543 γ = 73.56
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE MACSCIENCE MIRRORS 2000-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 95.4 0.082 10.2 2.182 32375 30886 -3 27.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.34 92.7 0.173 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1PNK 2.3 19.14 29257 1583 100 0.15412 0.15127 0.20601 RANDOM 15.691
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 0.09 -0.49 0.38 -0.14 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.128 r_dihedral_angle_1_deg 3.501 r_scangle_it 2.912 r_scbond_it 1.787 r_angle_refined_deg 1.267 r_mcangle_it 1.011 r_mcbond_it 0.524 r_nbd_refined 0.226 r_symmetry_vdw_refined 0.182 r_symmetry_hbond_refined 0.173
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.128 r_dihedral_angle_1_deg 3.501 r_scangle_it 2.912 r_scbond_it 1.787 r_angle_refined_deg 1.267 r_mcangle_it 1.011 r_mcbond_it 0.524 r_nbd_refined 0.226 r_symmetry_vdw_refined 0.182 r_symmetry_hbond_refined 0.173 r_metal_ion_refined 0.16 r_xyhbond_nbd_refined 0.139 r_chiral_restr 0.086 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6074 Nucleic Acid Atoms Solvent Atoms 475 Heterogen Atoms 12
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling TRUNCATE data reduction REFMAC refinement CCP4 data scaling