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SPERM WHALE MYOGLOBIN (FERROUS, NITRIC OXIDE BOUND)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2SPL PDB ENTRY 2SPL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9 pH 9.
Crystal Properties Matthews coefficient Solvent content 3.18 61.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.506 α = 90 b = 91.506 β = 90 c = 45.853 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 IMAGE PLATE RIGAKU 1997-02-14 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE SIEMENS
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 99 0.064 26.4 4.2 17289
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 2 99.8 0.292 5.5 3.9
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION DIFFERENCE FOURIER PDB ENTRY 2SPL 1.9 5 16304 1630 99.1 0.155 0.1531 0.1422 0.2059
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 1382.3
RMS Deviations Key Refinement Restraint Deviation s_similar_adp_cmpnt 0.102 s_anti_bump_dis_restr 0.08 s_non_zero_chiral_vol 0.053 s_zero_chiral_vol 0.049 s_angle_d 0.018 s_from_restr_planes 0.015 s_bond_d 0.009 s_similar_dist 0.004 s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1228 Nucleic Acid Atoms Solvent Atoms 138 Heterogen Atoms 50
Software Software Software Name Purpose SHELXL-96 model building X-PLOR model building SHELXL-96 refinement X-PLOR refinement XDS data reduction XSCALE data scaling SHELXL-96 phasing X-PLOR phasing