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Adenovirus Ad3 fibre head
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KNB PDB ENTRY 1KNB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 RESERVOIR: 1.5 M LI2SO4, 0.1 M HEPES PH 7.0, 7.5 MG/ML PROTEIN IN 0.02 M TRIS-HCL PH 7.0 0.001 M EDTA, 0.02 M NACL
Crystal Properties Matthews coefficient Solvent content 3.51 64.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.58 α = 90 b = 96.58 β = 90 c = 154.57 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH SAGITALLY FOCUSING 2ND CRYSTAL, MULTILAYER 2000-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 19.389 98.6 0.045 0.045 9 3.1 108500 29.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 97.9 0.331 0.331 1.9 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1KNB 1.6 19.96 105445 5271 98.6 0.176 0.1694 0.216 0.1998 RANDOM 36.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 23.6 p_special_tor 15 p_staggered_tor 12.6 p_scangle_it 7.9 p_scbond_it 6.5 p_mcangle_it 5.8 p_planar_tor 5.7 p_mcbond_it 4.9 p_multtor_nbd 0.263 p_singtor_nbd 0.182
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 23.6 p_special_tor 15 p_staggered_tor 12.6 p_scangle_it 7.9 p_scbond_it 6.5 p_mcangle_it 5.8 p_planar_tor 5.7 p_mcbond_it 4.9 p_multtor_nbd 0.263 p_singtor_nbd 0.182 p_chiral_restr 0.175 p_xyhbond_nbd 0.12 p_planar_d 0.037 p_angle_d 0.035 p_bond_d 0.015 p_angle_deg p_hb_or_metal_coord p_plane_restr p_xhyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4497 Nucleic Acid Atoms Solvent Atoms 891 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing