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BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH THE PEPTIDE ANTIBIOTIC EFRAPEPTIN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BMF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.2 PH 8.2
Crystal Properties Matthews coefficient Solvent content 3.03 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 285.7 α = 90 b = 107.4 β = 90 c = 139.5 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1995-05-04 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.35 83 0.152 2.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 1BMF 3.1 5.5 54888 692 0.177 0.1955 0.22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation t_dihedral_angle_d 16.2 t_it 3.6 t_angle_deg 1.75 t_nbd 0.016 t_gen_planes 0.008 t_bond_d 0.006 t_trig_c_planes 0.006 t_incorr_chiral_ct t_pseud_angle t_omega_torsion
RMS Deviations Key Refinement Restraint Deviation t_dihedral_angle_d 16.2 t_it 3.6 t_angle_deg 1.75 t_nbd 0.016 t_gen_planes 0.008 t_bond_d 0.006 t_trig_c_planes 0.006 t_incorr_chiral_ct t_pseud_angle t_omega_torsion t_other_torsion t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22836 Nucleic Acid Atoms Solvent Atoms 535 Heterogen Atoms 156
Software Software Software Name Purpose CCP4 model building TNT refinement MOSFLM data reduction CCP4 data scaling CCP4 phasing