1E6C

K15M MUTANT OF SHIKIMATE KINASE FROM ERWINIA CHRYSANTHEMI


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1810% PEG8000, 100MM TRIS/HCL BUFFER PH 8.0, 2.5MM ADP, 2.5MM SHIKIMATE, 10MM MGCL2
Crystal Properties
Matthews coefficientSolvent content
2.2444.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.86α = 90
b = 106.94β = 119.96
c = 42.75γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMIRROR1998-02-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.6SRSPX9.6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.821.4930.0780.078155.32740719.073
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8669.10.3480.3481.91.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1SHK1.825308381551930.1880.227RANDOM23.8
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor36.4
p_staggered_tor16.9
p_special_tor15
p_planar_tor4
p_scangle_it3.576
p_mcangle_it2.31
p_scbond_it2.242
p_mcbond_it1.623
p_multtor_nbd0.265
p_singtor_nbd0.184
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor36.4
p_staggered_tor16.9
p_special_tor15
p_planar_tor4
p_scangle_it3.576
p_mcangle_it2.31
p_scbond_it2.242
p_mcbond_it1.623
p_multtor_nbd0.265
p_singtor_nbd0.184
p_xyhbond_nbd0.173
p_chiral_restr0.125
p_angle_d0.038
p_planar_d0.033
p_plane_restr0.021
p_bond_d0.015
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2610
Nucleic Acid Atoms
Solvent Atoms214
Heterogen Atoms60

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing