Structure of the ribozyme substrate hairpin of Neurospora VS RNA. A close look at the cleavage site
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | NOESY | 100 mM | 5.0 | 302 | ||||
| 2 | TOCSY | 100 mM | 5.0 | 302 | ||||
| 3 | DQF-COSY | 100 mM | 5.0 | 302 | ||||
| 4 | 1H-31P HETCOR | 100 mM | 5.0 | 302 | ||||
| 5 | 1H-13C HMQC | 100 mM | 5.0 | 302 | ||||
| 6 | 1H-31P HETERO-TOCSY-NOESY | 100 mM | 5.0 | 302 | ||||
| 7 | NOESY-J | 100 mM | 5.0 | 302 | ||||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DRX | 500 |
| 2 | Varian | INOVA | 600 |
| 3 | Varian | INOVA | 750 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| TORSIAN ANGLE DYNAMICS | X-PLOR | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | LEAST RESTRAINT VIOLATION AND LOWEST ENERGY |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (n/a) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | X-PLOR | 3.851 | BRUNGER |
| 2 | structure solution | X-PLOR | ||
