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Flavocytochrome C3 from Shewanella frigidimarina histidine 365 mutated to alanine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QJD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.4 HANGING DROP, 50-100MM TRIS-HCL PH 7.4, 80MM NACL, 17-20% PEG 8000, 10MM FUMARATE
Crystal Properties Matthews coefficient Solvent content 2.24 54.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.571 α = 90 b = 92.172 β = 91.08 c = 78.489 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD RH COATED SI MIRROR 1999-10-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 18 90.7 0.049 19.01 2.699 54314
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 74.9 0.117 7.14 1.97
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1QJD 1.8 18 51592 5513 86 0.1814 0.1814 0.247 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 5062
RMS Deviations Key Refinement Restraint Deviation s_similar_adp_cmpnt 0.069 s_non_zero_chiral_vol 0.043 s_zero_chiral_vol 0.034 s_from_restr_planes 0.0257 s_angle_d 0.022 s_bond_d 0.007 s_anti_bump_dis_restr 0.007 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4212 Nucleic Acid Atoms Solvent Atoms 605 Heterogen Atoms 240
Software Software Software Name Purpose SHELXL-97 refinement DENZO data reduction SCALEPACK data scaling SHELXL-97 phasing