1DK6 | pdb_00001dk6

NMR structure analysis of the DNA nine base pair duplex D(CATGAGTAC) D(GTAC(NP3)CATG)

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D NOESY	4.5MM DUPLEX; 100MM NACL, 10MM NAOP, 1MM EDTA, PH 7			7	AMBIENT	285
2	DQF-COSY	4.5MM DUPLEX; 100MM NACL, 10MM NAOP, 1MM EDTA, PH 7			7	AMBIENT	285

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600

NMR Refinement
Method	Details	Software
SIMULATED ANNEALING MOLECULAR DYNAMICS	THE STRUCTURE IS BASED ON A TOTAL OF 624 RESTRAINTS, 198 ARE DERIVED FROM ASSIGNED NOES, 394 ARE LOWER BOUND NOE-DERIVED RESTRAINTS TO UNASSIGN 1H5*/2H5* PROTONS, AND 32 ARE DIHEDRAL ANGLE RESTRAINTS	CORMA

NMR Ensemble Information
Conformer Selection Criteria
Conformers Calculated Total Number
Conformers Submitted Total Number	1

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	CORMA	5.2	LIU
2	iterative matrix relaxation	MARDIGRAS	5.2	BORGIAS, JAMES
3	processing	NMRPipe	1.7	DELAGLIO
4	refinement	X-PLOR	V3.840	BRUNGER
5	collection	VNMR	6.1B	VARIAN
6	data analysis	Sparky	3.74	DAY, KNELLER