1D1O

COOPERATIVITY IN EF-HAND CA2+-BINDING PROTEINS: EVIDENCE OF SITE-SITE COMMUNICATION FROM BINDING-INDUCED CHANGES IN STRUCTURE AND DYNAMICS OF N56A CALBINDIN D9K


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY4 MM N56A-CALBINDIN D9K06.0AMBIENT300
23D_15N-SEPARATED_NOESY4 MM 15N-LABELED N56A-CALBINDIN D9K;06.0AMBIENT300
3HSQC-J4 MM 15N-LABELED N56A-CALBINDIN D9K;06.0AMBIENT300
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAMX500
2BrukerDRX600
3VarianINOVA600
NMR Refinement
MethodDetailsSoftware
DISTANCE GEOMETRY FOLLOWED BY SIMULATED ANNEALINGNMR REFINEMENT WAS BASED ON A TOTAL OF 910 NOE-DERIVED DISTANCE CONSTRAINTS AND 78 TORSION ANGLE CONSTRAINTS. SIMULATED ANNEALING CYCLE OF 20 PS HEATING TO 1200 K.Felix
NMR Ensemble Information
Conformer Selection CriteriaSTRUCTURES WITH ACCEPTABLE MOLECULAR ENEGIES WERE ORDERED BY LEAST RESTRAINT VIOLATIONS. THE 24 BEST CONFORMERS WERE SELECTED TO FACILITATE COMPARISON TO PREVIOUS STRUCTURES OF THE PROTEIN AND BECAUSE THIS SURPASSES THE STATISTICAL REQUIREMENT TO REPRESENT ALL OF CONFORMATIONAL SPACE CONSISTENT WITH THE DATA.
Conformers Calculated Total Number50
Conformers Submitted Total Number24
Representative Model1 (closest to the average)
Additional NMR Experimental Information
Details1H RESONANCE ASIGNMENTS WERE REPORTED IN THE PROTEIN SCIENCE PAPER BY WIMBERLY ET AL. A 3D 15N SPARATED TOCSY WAS RECORDED TO CONFIRM THESE ASSIGNMENTS AND ASSIGN THE 15N RESONANCES.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionFelix97.0MSI, SAN DIEGO, CA
2structure solutionDIANA2.8GUNTERT, BRAUN, BILLETER, WUTHRICH
3refinementAmber4.1PEARLMAN, CASE, CALDWELL, ROSS, CHEATHAM, FERGUSON, SEIBEL, SINGH, WEINER, KOLLMAN