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HORSE LIVER ALCOHOL DEHYDROGENASE COMPLEXED TO NADH AND (1S,3R)3-BUTYLTHIOLANE 1-OXIDE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HLD PDB ENTRY 1HLD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 batch dialysis 7 THE PROTEIN WAS CRYSTALLIZED BY THE BATCH DIALYSIS METHOD USING MPD AS THE PRECIPITANT AT PH 7.0, 50 MM AMMONIUM N-[TRIS(HYDROXYMETHYL)METHYL]-2 AMINOETHANESULFONATE, WITH 0.66 MM NADH AND 0.76 MM 3-BUTYLTHIOLANE 1-OXIDE., batch dialysis
Crystal Properties Matthews coefficient Solvent content 2.35 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.93 α = 90 b = 180.2 β = 106 c = 86.8 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS 1996-01-10 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 79 0.043 18.1 2 78371 17.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.03 31 0.152 4.4 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HLD 2 20 78371 2335 79 0.212 0.19 0.1684 0.23 0.2096 RANDOM 18.43
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 33.5 p_staggered_tor 16.1 p_planar_tor 3.7 p_scangle_it 2.3 p_mcangle_it 1.5 p_scbond_it 1.3 p_mcbond_it 0.86 p_multtor_nbd 0.254 p_singtor_nbd 0.175 p_chiral_restr 0.093
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 33.5 p_staggered_tor 16.1 p_planar_tor 3.7 p_scangle_it 2.3 p_mcangle_it 1.5 p_scbond_it 1.3 p_mcbond_it 0.86 p_multtor_nbd 0.254 p_singtor_nbd 0.175 p_chiral_restr 0.093 p_angle_d 0.03 p_planar_d 0.03 p_plane_restr 0.02 p_bond_d 0.01 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11140 Nucleic Acid Atoms Solvent Atoms 1518 Heterogen Atoms 224
Software Software Software Name Purpose AMoRE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling