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COMPLEX FORMED BETWEEN PROTEOLYTICALLY GENERATED LACTOFERRIN FRAGMENT AND PROTEINASE K
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3PRK PDB ENTRY 3PRK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS 6 279 60 MG/ML PROTEIN IN 10MM TRIS.HCL, PH 6.0 WAS MICRODIALYZED AGAINST 10% ETHANOL AT 6 DEGREE CELSIUS, microdialysis, temperature 279K
Crystal Properties Matthews coefficient Solvent content 2.19 43.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.6 α = 90 b = 38.581 β = 105.8 c = 79.22 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 288 IMAGE PLATE MARRESEARCH PIN HOLE 1997-02-02 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.44 12 92.2 0.07 0.07 22.2 2.42 9051 3 29.19
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.44 2.57 80.9 0.168 0.168 9.7 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT A POSTERIORI PDB ENTRY 3PRK 2.44 12 9044 9044 903 92.2 0.167 0.16 0.225 RANDOM 19.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 26.92 p_staggered_tor 20.846 p_planar_tor 9 p_scangle_it 2.86 p_scbond_it 1.941 p_mcangle_it 1.503 p_mcbond_it 0.905 p_multtor_nbd 0.32 p_singtor_nbd 0.196 p_chiral_restr 0.164
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 26.92 p_staggered_tor 20.846 p_planar_tor 9 p_scangle_it 2.86 p_scbond_it 1.941 p_mcangle_it 1.503 p_mcbond_it 0.905 p_multtor_nbd 0.32 p_singtor_nbd 0.196 p_chiral_restr 0.164 p_planar_d 0.062 p_plane_restr 0.024 p_angle_d 0.021 p_bond_d 0.008 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2086 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms 2
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing CCP4 refinement