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MATURE OXY-COPE CATALYTIC ANTIBODY WITH HAPTEN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6FAB PDB ENTRY 6FAB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 PROTEIN WAS CRYSTALLIZED FROM 25%PEG 1000, 0.1 M SODIUM ACETATE, PH 4.6, 0.3 M CDCL2 AND 0.1 M AMMONIUM SULFATE IN THE PRESENCE OF 2MM HAPTEN.
Crystal Properties Matthews coefficient Solvent content 2.3 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.78 α = 90 b = 81.5 β = 93.43 c = 128.2 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 94 IMAGE PLATE MARRESEARCH MIRRORS 1997-01-26 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 90.9 0.06 0.06 16 4 24768 2 34
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.69 87.5 0.142 0.142 6 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 6FAB 2.6 20 2 24768 2434 91.1 0.2 0.2 0.1984 0.305 0.3025 RANDOM 36.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 30.1 x_scangle_it 7.1 x_mcangle_it 5.5 x_scbond_it 5.3 x_mcbond_it 3.5 x_angle_deg 1.4 x_improper_angle_d 0.65 x_bond_d 0.008 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 30.1 x_scangle_it 7.1 x_mcangle_it 5.5 x_scbond_it 5.3 x_mcbond_it 3.5 x_angle_deg 1.4 x_improper_angle_d 0.65 x_bond_d 0.008 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6638 Nucleic Acid Atoms Solvent Atoms 186 Heterogen Atoms 63
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling X-PLOR model building X-PLOR refinement X-PLOR phasing