1AQ6

STRUCTURE OF L-2-HALOACID DEHALOGENASE FROM XANTHOBACTER AUTOTROPHICUS


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1macroseeding7MACROSEEDING, DROP: 16% PEG8000, 200 MM SODIUM FORMATE, 100 MM BIS-TRIS PH 7.0; WELL: 22% PEG8000, 200 MM SODIUM FORMATE, 100 MM BIS-TRIS PH 7.0, macroseeding
Crystal Properties
Matthews coefficientSolvent content
238

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.246α = 90
b = 84.16β = 90
c = 91.487γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120IMAGE PLATEMARRESEARCH1996-07-30M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE BW7BEMBL/DESY, HAMBURGBW7B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.952599.40.04215.213.5325073
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.951.9898.70.156613.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMULTIPLE ISOMORPHOUS REPLACEMENTTHROUGHOUT1.95530835150197.90.1920.190.248RANDOM21.6
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor34.8
p_staggered_tor17.1
p_planar_tor3.6
p_scangle_it2.961
p_scbond_it2.167
p_mcangle_it1.461
p_mcbond_it1.081
p_multtor_nbd0.247
p_xyhbond_nbd0.183
p_singtor_nbd0.173
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor34.8
p_staggered_tor17.1
p_planar_tor3.6
p_scangle_it2.961
p_scbond_it2.167
p_mcangle_it1.461
p_mcbond_it1.081
p_multtor_nbd0.247
p_xyhbond_nbd0.183
p_singtor_nbd0.173
p_chiral_restr0.096
p_angle_d0.025
p_planar_d0.025
p_plane_restr0.0201
p_bond_d0.009
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3772
Nucleic Acid Atoms
Solvent Atoms334
Heterogen Atoms9

Software

Software
Software NamePurpose
PHASESphasing
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling