Annotations: 9ZPD

Cryo-EM structure of human PI3KC3-C2 in complex with Rubicon Middle Region of C terminus

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	APG6 N-terminal segment-like	8090327	3002432	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D		e9zpdD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
B	PKD_channel	e9zpdB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
A	Pkinase	e9zpdA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Pkinase	ECOD (v295.2)
A	PKD_channel	e9zpdA2	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D, E	PF04111	Apg6 BARA domain (APG6)	Apg6 BARA domain	In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells [1]. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the ...	In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells [1]. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [2]. This entry is the Beta-Alpha repeated, autophagy-specific (BARA) domain [3].	Domain
D, E	PF17675	Apg6 coiled-coil region (APG6_N)	Apg6 coiled-coil region	-	Coiled-coil
C	PF10186	Vacuolar sorting 38 and autophagy-related subunit 14 (ATG14)	Vacuolar sorting 38 and autophagy-related subunit 14	-	Family
C	PF00168	C2 domain (C2)	C2 domain		Domain
B	PF00792	Phosphoinositide 3-kinase C2 (PI3K_C2)	Phosphoinositide 3-kinase C2	Phosphoinositide 3-kinase region postulated to contain a C2 domain. Outlier of Pfam:PF00168 family.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D, E	Beclin-1,Run domain Beclin-1-interacting and cysteine-rich domain-containing protein chimera	phosphatidylinositol 3-kinase binding protein binding binding protein-macromolecule adaptor activity molecular adaptor activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding identical protein binding GTPase binding kinase binding protein kinase binding phospholipid binding lipid binding phosphatidylinositol 3-kinase binding protein binding binding protein-macromolecule adaptor activity molecular adaptor activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding identical protein binding GTPase binding kinase binding protein kinase binding phospholipid binding lipid binding phosphatidylinositol phosphate binding enzyme regulator activity molecular function regulator activity phosphatidylinositol 3-kinase inhibitor activity phosphatidylinositol 3-kinase regulator activity kinase regulator activity	cellular response to stimulus cytoplasmic pattern recognition receptor signaling pathway regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process pattern recognition receptor signaling pathway response to stimulus regulation of response to external stimulus intracellular receptor signaling pathway signaling positive regulation of biological process response to biotic stimulus intracellular signal transduction cellular response to stimulus cytoplasmic pattern recognition receptor signaling pathway regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process pattern recognition receptor signaling pathway response to stimulus regulation of response to external stimulus intracellular receptor signaling pathway signaling positive regulation of biological process response to biotic stimulus intracellular signal transduction cell communication positive regulation of response to stimulus immune response-activating signaling pathway positive regulation of response to external stimulus immune response-regulating signaling pathway positive regulation of immune response regulation of response to stress response to stress innate immune response regulation of immune system process response to external biotic stimulus signal transduction positive regulation of immune system process innate immune response-activating signaling pathway regulation of biological process positive regulation of innate immune response defense response immune response response to other organism regulation of innate immune response biological regulation defense response to symbiont response to external stimulus regulation of response to stimulus immune system process defense response to other organism positive regulation of defense response activation of innate immune response regulation of immune response cellular process activation of immune response response to chemical response to xenobiotic stimulus p38MAPK cascade intracellular signaling cassette MAPK cascade cellular response to metal ion cellular response to chemical stimulus response to metal ion response to aluminum ion cellular response to aluminum ion glycerophospholipid biosynthetic process phosphatidylinositol-3-phosphate biosynthetic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phosphatidylinositol phosphate biosynthetic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process metabolic process glycerolipid metabolic process phosphorus metabolic process lipid metabolic process cellular component disassembly catabolic process protein-containing complex organization macroautophagy autophagy protein-containing complex disassembly cellular component organization autophagosome maturation cellular component organization or biogenesis process utilizing autophagic mechanism regulation of catabolic process regulation of autophagy regulation of macroautophagy regulation of metabolic process cell division cellular response to nutrient levels response to nutrient levels cellular response to stress response to starvation cellular response to glucose starvation cellular response to starvation mitotic nuclear division mitotic metaphase chromosome alignment organelle fission chromosome organization sister chromatid segregation mitotic cell cycle metaphase chromosome alignment localization organelle organization nuclear division mitotic cell cycle process chromosome localization organelle localization nuclear chromosome segregation mitotic sister chromatid segregation cell cycle chromosome segregation cell cycle process apoptotic process cell death programmed cell death response to mitochondrial depolarisation response to iron(II) ion response to iron ion negative regulation of programmed cell death negative regulation of cellular process negative regulation of biological process regulation of programmed cell death regulation of cytokinesis regulation of cell cycle process cytokinesis regulation of cell division regulation of cell cycle JNK cascade positive regulation of cell communication positive regulation of signal transduction regulation of signal transduction regulation of intrinsic apoptotic signaling pathway positive regulation of apoptotic signaling pathway regulation of intracellular signal transduction intrinsic apoptotic signaling pathway positive regulation of cellular process regulation of signaling positive regulation of programmed cell death regulation of apoptotic process positive regulation of intracellular signal transduction positive regulation of apoptotic process apoptotic signaling pathway regulation of cell communication positive regulation of intrinsic apoptotic signaling pathway regulation of apoptotic signaling pathway positive regulation of signaling response to decreased oxygen levels response to hypoxia response to oxygen levels response to abiotic stimulus cellular defense response response to nutrient response to oxygen-containing compound response to vitamin E response to vitamin positive regulation of organelle organization regulation of cellular component organization positive regulation of cellular component organization positive regulation of vacuole organization autophagosome organization cellular component biogenesis positive regulation of metabolic process cellular component assembly positive regulation of autophagosome assembly positive regulation of macroautophagy positive regulation of autophagy autophagosome assembly organelle assembly vacuole organization positive regulation of cellular component biogenesis regulation of autophagosome assembly regulation of vacuole organization regulation of cellular component biogenesis regulation of organelle organization positive regulation of catabolic process regulation of organelle assembly positive regulation of organelle assembly cellular response to amino acid starvation response to amino acid starvation defense response to virus response to virus receptor catabolic process receptor metabolic process macromolecule metabolic process macromolecule catabolic process cellular localization late endosome to vacuole transport transport establishment of localization in cell vacuolar transport intracellular transport establishment of localization vesicle-mediated transport protein-containing complex assembly negative regulation of lysosome organization negative regulation of cellular component organization lytic vacuole organization lysosome organization negative regulation of organelle organization regulation of lysosome organization rhythmic process circadian rhythm cellular response to nitrogen levels cellular response to nitrogen starvation negative regulation of apoptotic process membraneless organelle assembly regulation of cytoplasmic stress granule assembly cytoplasmic stress granule assembly positive regulation of cytoplasmic stress granule assembly regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction response to copper ion cellular response to copper ion cellular response to oxidative stress cellular response to chemical stress cellular response to oxygen-containing compound cellular response to hydrogen peroxide response to reactive oxygen species response to hydrogen peroxide response to oxidative stress cellular response to reactive oxygen species response to lead ion cell surface receptor protein serine/threonine kinase signaling pathway cell surface receptor signaling pathway SMAD protein signal transduction enzyme-linked receptor protein signaling pathway establishment of protein localization protein targeting establishment of protein localization to vacuole protein localization to vacuole lysosomal transport protein localization to lysosome establishment of protein localization to organelle protein transport protein targeting to lysosome protein localization to organelle macromolecule localization intracellular protein localization protein targeting to vacuole intracellular protein transport cellular response to endogenous stimulus cellular response to growth factor stimulus response to endogenous stimulus cellular response to epidermal growth factor stimulus response to epidermal growth factor response to growth factor mitophagy autophagy of mitochondrion endosomal transport vesicle-mediated transport between endosomal compartments early endosome to late endosome transport membrane organization import into cell engulfment of apoptotic cell phagocytosis, engulfment membrane invagination phagocytosis apoptotic cell clearance endocytosis plasma membrane invagination cellular response to oxygen levels cellular response to decreased oxygen levels cellular response to oxygen-glucose deprivation response to oxygen-glucose deprivation regulation of localization regulation of chromosome segregation regulation of attachment of mitotic spindle microtubules to kinetochore regulation of attachment of spindle microtubules to kinetochore positive regulation of cell cycle process positive regulation of chromosome segregation attachment of spindle microtubules to kinetochore attachment of mitotic spindle microtubules to kinetochore positive regulation of attachment of spindle microtubules to kinetochore regulation of chromosome organization positive regulation of cell cycle regulation of mitotic sister chromatid segregation regulation of sister chromatid segregation positive regulation of attachment of mitotic spindle microtubules to kinetochore regulation of metaphase plate congression multivesicular body sorting pathway regulation of autophagosome maturation regulation of protein-containing complex disassembly negative regulation of protein-containing complex disassembly negative regulation of catabolic process negative regulation of metabolic process negative regulation of autophagosome maturation negative regulation of macroautophagy negative regulation of autophagy negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction negative regulation of cell communication negative regulation of response to stimulus negative regulation of signal transduction regulation of transport negative regulation of transport negative regulation of endocytosis regulation of endocytosis	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol phosphatidylinositol 3-kinase complex, class III, type II protein-containing complex catalytic complex membrane membrane protein complex transferase complex phosphatidylinositol 3-kinase complex transferase complex, transferring phosphorus-containing groups phosphatidylinositol 3-kinase complex, class III extrinsic component of membrane cellular anatomical structure intracellular anatomical structure cytoplasm cytosol phosphatidylinositol 3-kinase complex, class III, type II protein-containing complex catalytic complex membrane membrane protein complex transferase complex phosphatidylinositol 3-kinase complex transferase complex, transferring phosphorus-containing groups phosphatidylinositol 3-kinase complex, class III extrinsic component of membrane somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection membrane-bounded organelle intracellular organelle organelle vacuole autophagosome intracellular membrane-bounded organelle Golgi apparatus subcompartment Golgi apparatus organelle subcompartment endomembrane system trans-Golgi network endosome membrane endosome intracellular vesicle cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle vesicle organelle membrane phagophore assembly site phagocytic vesicle endocytic vesicle mitochondrial membrane mitochondrion cytoplasmic side of membrane organelle outer membrane cytoplasmic side of mitochondrial outer membrane side of membrane organelle envelope mitochondrial envelope mitochondrial outer membrane outer membrane endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane phosphatidylinositol 3-kinase complex, class III, type I nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular organelle lumen nuclear body nucleoplasm organelle lumen membraneless organelle nuclear lumen early endosome late endosome lytic vacuole lysosome
C	UV radiation resistance-associated gene protein	SH3 domain binding protein binding binding protein domain specific binding SNARE binding	glycerophospholipid biosynthetic process phosphatidylinositol-3-phosphate biosynthetic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phosphatidylinositol phosphate biosynthetic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process metabolic process cellular process glycerophospholipid biosynthetic process phosphatidylinositol-3-phosphate biosynthetic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phosphatidylinositol phosphate biosynthetic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process metabolic process cellular process glycerolipid metabolic process phosphorus metabolic process lipid metabolic process cellular component disassembly catabolic process protein-containing complex organization macroautophagy autophagy protein-containing complex disassembly cellular component organization autophagosome maturation cellular component organization or biogenesis process utilizing autophagic mechanism membrane organization transport membrane fusion organelle membrane fusion establishment of localization vesicle-mediated transport cellular component biogenesis vesicle organization organelle fusion localization organelle organization cellular component assembly protein-containing complex assembly SNARE complex assembly vesicle fusion cell cycle chromosome segregation cell cycle process double-strand break repair via classical nonhomologous end joining cellular response to stimulus double-strand break repair response to stimulus double-strand break repair via nonhomologous end joining DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress macromolecule metabolic process DNA repair positive regulation of organelle organization regulation of cellular process regulation of cellular component organization positive regulation of cellular component organization regulation of autophagosome maturation positive regulation of biological process regulation of autophagy regulation of protein-containing complex disassembly positive regulation of metabolic process positive regulation of macroautophagy positive regulation of protein-containing complex disassembly positive regulation of cellular process positive regulation of autophagy regulation of biological process biological regulation regulation of catabolic process positive regulation of autophagosome maturation regulation of organelle organization positive regulation of catabolic process regulation of macroautophagy regulation of metabolic process Golgi localization cellular localization organelle localization maintenance of Golgi location maintenance of organelle location maintenance of location in cell maintenance of location multivesicular body sorting pathway regulation of cytokinesis regulation of cell cycle process cytokinesis regulation of cell division cell division regulation of cell cycle retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum Golgi vesicle transport regulation of protein modification process regulation of catalytic activity regulation of protein phosphorylation regulation of transferase activity regulation of primary metabolic process phosphate-containing compound metabolic process protein metabolic process protein modification process protein phosphorylation phosphorylation regulation of protein metabolic process regulation of protein kinase activity regulation of macromolecule metabolic process regulation of molecular function regulation of kinase activity regulation of protein serine/threonine kinase activity macromolecule modification regulation of phosphorylation microtubule organizing center organization microtubule cytoskeleton organization centrosome cycle microtubule-based process cytoskeleton organization spindle organization receptor catabolic process receptor metabolic process macromolecule catabolic process	midbody cellular anatomical structure intracellular organelle centrosome microtubule organizing center intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton membrane-bounded organelle lytic vacuole vacuole midbody cellular anatomical structure intracellular organelle centrosome microtubule organizing center intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton membrane-bounded organelle lytic vacuole vacuole cytoplasm intracellular membrane-bounded organelle intracellular vesicle phagocytic vesicle cytoplasmic vesicle vesicle endocytic vesicle chromosome, centromeric region chromosome chromosomal region lysosome protein-containing complex early endosome endosome endomembrane system vacuolar membrane autophagosome membrane membrane autophagosome bounding membrane of organelle organelle membrane endoplasmic reticulum-Golgi intermediate compartment membrane endoplasmic reticulum-Golgi intermediate compartment late endosome endoplasmic reticulum
B	Phosphatidylinositol 3-kinase catalytic subunit type 3	phosphatidylinositol kinase activity kinase activity lipid kinase activity transferase activity catalytic activity 1-phosphatidylinositol-3-kinase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding phosphatidylinositol kinase activity kinase activity lipid kinase activity transferase activity catalytic activity 1-phosphatidylinositol-3-kinase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding catalytic activity, acting on a protein protein kinase activity	glycerophospholipid biosynthetic process phosphatidylinositol-3-phosphate biosynthetic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phosphatidylinositol phosphate biosynthetic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process metabolic process cellular process glycerophospholipid biosynthetic process phosphatidylinositol-3-phosphate biosynthetic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phosphatidylinositol phosphate biosynthetic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process metabolic process cellular process glycerolipid metabolic process phosphorus metabolic process lipid metabolic process cellular component disassembly catabolic process protein-containing complex organization macroautophagy autophagy protein-containing complex disassembly cellular component organization autophagosome maturation cellular component organization or biogenesis process utilizing autophagic mechanism regulation of biological process regulation of cellular process biological regulation regulation of catabolic process regulation of autophagy regulation of macroautophagy regulation of metabolic process cell division cellular response to stimulus cellular response to nutrient levels response to nutrient levels response to stimulus cellular response to stress response to stress response to starvation cellular response to glucose starvation cellular response to starvation signaling intracellular signal transduction cell communication phosphatidylinositol-mediated signaling signal transduction regulation of cytokinesis regulation of cell cycle process cytokinesis regulation of cell division cell cycle regulation of cell cycle cell cycle process vesicle organization organelle organization endosome organization endomembrane system organization regulation of immune effector process lymphocyte mediated immunity positive regulation of leukocyte mediated immunity positive regulation of response to biotic stimulus response to biotic stimulus positive regulation of leukocyte mediated cytotoxicity positive regulation of immune response positive regulation of natural killer cell mediated immunity leukocyte mediated immunity regulation of immune system process natural killer cell mediated immunity positive regulation of immune system process regulation of natural killer cell mediated immunity immune response response to other organism regulation of innate immune response response to external stimulus leukocyte mediated cytotoxicity immune effector process regulation of leukocyte mediated immunity regulation of response to stimulus defense response to other organism positive regulation of defense response natural killer cell mediated cytotoxicity regulation of immune response positive regulation of natural killer cell mediated cytotoxicity regulation of cell killing positive regulation of cell killing regulation of defense response regulation of response to biotic stimulus regulation of natural killer cell mediated cytotoxicity biological process involved in interspecies interaction between organisms regulation of response to external stimulus positive regulation of lymphocyte mediated immunity positive regulation of biological process positive regulation of response to stimulus positive regulation of response to external stimulus regulation of response to stress innate immune response positive regulation of immune effector process response to external biotic stimulus positive regulation of cellular process positive regulation of innate immune response defense response regulation of leukocyte mediated cytotoxicity defense response to symbiont regulation of lymphocyte mediated immunity immune system process cell killing synaptic vesicle endocytosis import into cell cellular localization transport synaptic vesicle cycle establishment of localization vesicle-mediated transport presynaptic endocytosis vesicle-mediated transport in synapse synaptic vesicle recycling localization establishment of localization in cell endocytosis intracellular signaling cassette phosphatidylinositol 3-kinase/protein kinase B signal transduction autophagosome assembly organelle assembly vacuole organization autophagosome organization cellular component biogenesis cellular component assembly gene expression macromolecule biosynthetic process protein maturation proteolysis protein processing protein metabolic process macromolecule metabolic process autophagy of peroxisome pexophagy host-mediated activation of viral genome replication host-mediated perturbation of viral genome replication host-mediated perturbation of viral process modulation of process of another organism host-mediated perturbation of symbiont process host-mediated activation of viral process establishment of protein localization protein targeting establishment of protein localization to vacuole intracellular transport protein localization to vacuole lysosomal transport protein localization to lysosome establishment of protein localization to organelle protein transport protein targeting to lysosome protein localization to organelle macromolecule localization vacuolar transport intracellular protein localization protein targeting to vacuole intracellular protein transport regulation of protein modification process positive regulation of protein metabolic process lipoprotein biosynthetic process lipoprotein metabolic process regulation of primary metabolic process protein lipidation positive regulation of metabolic process positive regulation of protein modification process positive regulation of lipoprotein metabolic process positive regulation of biosynthetic process positive regulation of protein lipidation regulation of lipoprotein metabolic process positive regulation of macromolecule metabolic process protein modification process regulation of biosynthetic process regulation of protein lipidation regulation of protein metabolic process regulation of macromolecule metabolic process macromolecule modification regulation of macromolecule biosynthetic process endosomal transport vesicle-mediated transport between endosomal compartments early endosome to late endosome transport response to acid chemical response to chemical response to oxygen-containing compound response to nitrogen compound response to amino acid response to L-leucine	cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure axoneme ciliary plasm cilium intracellular membraneless organelle plasma membrane bounded cell projection intracellular organelle cell projection cytoskeleton organelle membraneless organelle cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure axoneme ciliary plasm cilium intracellular membraneless organelle plasma membrane bounded cell projection intracellular organelle cell projection cytoskeleton organelle membraneless organelle cytoplasm cytosol phosphatidylinositol 3-kinase complex, class III, type II protein-containing complex catalytic complex membrane protein complex transferase complex phosphatidylinositol 3-kinase complex transferase complex, transferring phosphorus-containing groups phosphatidylinositol 3-kinase complex, class III extrinsic component of membrane synapse cell junction glutamatergic synapse vacuole autophagosome intracellular membrane-bounded organelle intracellular vesicle phagocytic vesicle phagocytic vesicle membrane cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane endocytic vesicle membrane vesicle organelle membrane endocytic vesicle endosome postsynaptic endosome endomembrane system postsynapse peroxisome microbody autolysosome lytic vacuole secondary lysosome lysosome presynapse presynaptic endosome phagophore assembly site midbody cell periphery plasma membrane GABA-ergic synapse phosphatidylinositol 3-kinase complex, class III, type I late endosome
A	Phosphoinositide 3-kinase regulatory subunit 4	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups	localization cellular localization late endosome to vacuole transport transport establishment of localization in cell cellular process vacuolar transport intracellular transport establishment of localization vesicle-mediated transport catabolic process macroautophagy autophagy metabolic process localization cellular localization late endosome to vacuole transport transport establishment of localization in cell cellular process vacuolar transport intracellular transport establishment of localization vesicle-mediated transport catabolic process macroautophagy autophagy metabolic process process utilizing autophagic mechanism	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection intracellular organelle intracellular anatomical structure vacuole autophagosome cytoplasm intracellular membrane-bounded organelle cytoskeleton membraneless organelle membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection intracellular organelle intracellular anatomical structure vacuole autophagosome cytoplasm intracellular membrane-bounded organelle cytoskeleton membraneless organelle intracellular membraneless organelle endosome intracellular vesicle endomembrane system cytoplasmic vesicle late endosome vesicle phosphatidylinositol 3-kinase complex transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex membrane membrane protein complex phosphatidylinositol 3-kinase complex, class III transferase complex extrinsic component of membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D, E	IPR038274	Atg6/Beclin C-terminal domain superfamily	Homologous Superfamily
D, E	IPR029318	Beclin-1, BH3 domain	Domain
D, E	IPR040455	Atg6, BARA domain	Domain
D, E	IPR007243	Atg6/Beclin	Family
D, E	IPR041691	Atg6/beclin, coiled-coil domain	Domain
D, E	IPR037213	RUN domain superfamily	Homologous Superfamily
D, E	IPR025258	Rubicon Homology Domain	Domain
D, E	IPR004012	RUN domain	Domain
D, E	IPR052428	Autophagy and Host Defense Regulator	Family
D, E	IPR048569	Rubicon, PI3K-binding domain	Domain
C	IPR000008	C2 domain	Domain
C	IPR018791	UV radiation resistance protein/autophagy-related protein 14	Family
C	IPR035892	C2 domain superfamily	Homologous Superfamily
B	IPR016024	Armadillo-type fold	Homologous Superfamily
B	IPR057756	Phosphatidylinositol 3-kinase type3/VPS34-like	Domain
B	IPR008290	Phosphatidylinositol 3-kinase, Vps34 type	Family
B	IPR015433	Phosphatidylinositol 3-/4-kinase	Family
B	IPR002420	C2 phosphatidylinositol 3-kinase-type domain	Domain
B	IPR000403	Phosphatidylinositol 3-/4-kinase, catalytic domain	Domain
B	IPR001263	Phosphoinositide 3-kinase, accessory (PIK) domain	Domain
B	IPR018936	Phosphatidylinositol 3-/4-kinase, conserved site	Conserved Site
B	IPR042236	Phosphoinositide 3-kinase, accessory (PIK) domain superfamily	Homologous Superfamily
B	IPR036940	Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily	Homologous Superfamily
B	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
B	IPR035892	C2 domain superfamily	Homologous Superfamily
A	IPR016024	Armadillo-type fold	Homologous Superfamily
A	IPR055231	PIK3R4-like, middle domain	Domain
A	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A	IPR021133	HEAT, type 2	Repeat
A	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A	IPR011989	Armadillo-like helical	Homologous Superfamily
A	IPR001680	WD40 repeat	Repeat
A	IPR000719	Protein kinase domain	Domain
A	IPR045162	Serine/threonine-protein kinase Vps15-like	Family
A	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A	IPR008271	Serine/threonine-protein kinase, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
D, E	: Q92622	status epilepticus myocardial infarction Lewy body dementia malignant colon neoplasm Status Epilepticus, Subclinical benign colon neoplasm lung benign neoplasm pancreatic intraductal papillary-mucinous carcinoma cancer osteosarcoma colonic neoplasm neurodegenerative disease ovarian cancer schizophrenia autosomal recessive spinocerebellar ataxia 15 status epilepticus myocardial infarction Lewy body dementia malignant colon neoplasm Status Epilepticus, Subclinical benign colon neoplasm lung benign neoplasm pancreatic intraductal papillary-mucinous carcinoma cancer osteosarcoma colonic neoplasm neurodegenerative disease ovarian cancer schizophrenia autosomal recessive spinocerebellar ataxia 15 astrocytic tumor juvenile dermatomyositis malignant ependymoma osteosarcoma spinocerebellar ataxia type 2 spinocerebellar ataxia type 6 Ataxias, Hereditary cerebellar ataxia large cell medulloblastoma malignant mesothelioma ovarian cancer spinocerebellar ataxia type 4 spinocerebellar ataxia type 7 autosomal dominant cerebellar ataxia intellectual disability lung cancer neurodegenerative disease spinocerebellar ataxia type 1 spinocerebellar ataxia type 5
C	: Q9P2Y5	dermatomyositis osteosarcoma tuberculosis
B	: Q8NEB9	atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma malignant colon neoplasm medulloblastoma schizophrenia bipolar disorder intellectual disability lung adenocarcinoma malignant ependymoma osteosarcoma breast cancer invasive ductal breast carcinoma lung cancer malignant glioma atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma malignant colon neoplasm medulloblastoma schizophrenia bipolar disorder intellectual disability lung adenocarcinoma malignant ependymoma osteosarcoma breast cancer invasive ductal breast carcinoma lung cancer malignant glioma ovarian cancer