9UAQ | pdb_00009uaq

CryoEM structure of GFP-like protein from Aequorea coerulescens with Trimbody

External Resource: Annotation

Domain Annotation: SCOP2 Classification
SAbDab Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I	SCOP2B Superfamily	GFP-like	8081027	3000576	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	GFP-like	8081027	3000576	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	GFP-like	8081027	3000576	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
D, E, F	Heavy Chain	IGHV1	-	green fluorescent protein \| h3-prac-5350a,2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase	SAbDab (2026-03-27)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF01081	KDPG and KHG aldolase (Aldolase)	KDPG and KHG aldolase	This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G, H, I	Green fluorescent protein	-	bioluminescence metabolic process cellular process generation of precursor metabolites and energy	-
D, E, F	GFP-nanobody-TAIL	-	-	-
A, B, C	H3-PrAC-5350A,2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase	2-dehydro-3-deoxy-6-phosphogalactonate aldolase activity lyase activity catalytic activity carbon-carbon lyase activity aldehyde-lyase activity	carbohydrate metabolic process catabolic process oxoacid metabolic process carbohydrate catabolic process aldonic acid catabolic process carboxylic acid metabolic process primary metabolic process organic acid catabolic process organic acid metabolic process monocarboxylic acid catabolic process galactonate catabolic process carboxylic acid catabolic process D-galactonate catabolic process metabolic process carbohydrate metabolic process catabolic process oxoacid metabolic process carbohydrate catabolic process aldonic acid catabolic process carboxylic acid metabolic process primary metabolic process organic acid catabolic process organic acid metabolic process monocarboxylic acid catabolic process galactonate catabolic process carboxylic acid catabolic process D-galactonate catabolic process metabolic process cellular process small molecule metabolic process monocarboxylic acid metabolic process small molecule catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G, H, I	IPR000786	Green fluorescent protein, GFP	Family
G, H, I	IPR011584	Green fluorescent protein-related	Family
G, H, I	IPR009017	Green fluorescent protein	Homologous Superfamily
A, B, C	IPR000887	KDPG/KHG aldolase	Family
A, B, C	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
G, H, I	GYS	Parent Component: SER, TYR, GLY RESID: AA0184 PSI-MOD : L-serine 5-imidazolinone glycine MOD:00192

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.