9SEB | pdb_00009seb

Crystal Structure of human exonuclease 1 (Exo1) with DNA and compound 20

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth Z]	Nucleoporin_C	e9sebZ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Nucleoporin_C	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth Z]	PF00867	XPG I-region (XPG_I)	XPG I-region	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth Z]	Exonuclease 1	single-stranded DNA 5'-3' DNA exonuclease activity DNA exonuclease activity 5'-3' exonuclease activity catalytic activity, acting on a nucleic acid hydrolase activity 5'-3' DNA exonuclease activity DNA exonuclease activity, producing 5'-phosphomonoesters DNA nuclease activity single-stranded DNA exodeoxyribonuclease activity catalytic activity, acting on DNA nuclease activity hydrolase activity, acting on ester bonds catalytic activity exonuclease activity single-stranded DNA 5'-3' DNA exonuclease activity DNA exonuclease activity 5'-3' exonuclease activity catalytic activity, acting on a nucleic acid hydrolase activity 5'-3' DNA exonuclease activity DNA exonuclease activity, producing 5'-phosphomonoesters DNA nuclease activity single-stranded DNA exodeoxyribonuclease activity catalytic activity, acting on DNA nuclease activity hydrolase activity, acting on ester bonds catalytic activity exonuclease activity chromatin binding binding DNA binding nucleic acid binding DNA endonuclease activity endonuclease activity flap endonuclease activity RNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism catalytic activity, acting on RNA RNA-DNA hybrid ribonuclease activity RNA nuclease activity RNA endonuclease activity double-stranded DNA 5'-3' DNA exonuclease activity double-stranded DNA exodeoxyribonuclease activity cation binding ion binding metal ion binding small molecule binding	cellular response to stimulus mismatch repair response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair cellular response to stimulus mismatch repair response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair formation of extrachromosomal circular DNA telomere organization chromosome organization cellular component biogenesis cellular component organization telomere maintenance organelle organization cellular component assembly telomere maintenance via telomere trimming t-circle formation cellular component organization or biogenesis DNA recombination DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity DNA replication DNA strand resection involved in replication fork processing replication fork processing	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen intracellular membraneless organelle nuclear body membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen intracellular membraneless organelle nuclear body membraneless organelle
B	DNA (5'-D(PAP(SC)PGPAPCPTPAPGPCP(GS))-3')	-	-	-
A	DNA (5'-D(CP(GS)PCPTPAPGPTPCPGPTPCPAP*(PST))-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth Z]	IPR044752	Exonuclease 1-like, PIN-like domain	Domain
C [auth Z]	IPR008918	Helix-hairpin-helix motif, class 2	Conserved Site
C [auth Z]	IPR019974	XPG conserved site	Conserved Site
C [auth Z]	IPR037315	Exonuclease-1, H3TH domain	Domain
C [auth Z]	IPR006084	XPG/Rad2 endonuclease	Family
C [auth Z]	IPR006086	XPG-I domain	Domain
C [auth Z]	IPR029060	PIN-like domain superfamily	Homologous Superfamily
C [auth Z]	IPR036279	5'-3' exonuclease, C-terminal domain superfamily	Homologous Superfamily
C [auth Z]	IPR006085	XPG, N-terminal	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth Z]	: Q9UQ84	breast carcinoma colorectal cancer breast cancer Mammary Neoplasms non-small cell lung carcinoma peripheral nervous system disease psoriasis atypical teratoid rhabdoid tumor ductal breast carcinoma in situ invasive ductal breast carcinoma lung cancer malignant mesothelioma osteosarcoma peripheral neuropathy skin basal cell carcinoma breast carcinoma colorectal cancer breast cancer Mammary Neoplasms non-small cell lung carcinoma peripheral nervous system disease psoriasis atypical teratoid rhabdoid tumor ductal breast carcinoma in situ invasive ductal breast carcinoma lung cancer malignant mesothelioma osteosarcoma peripheral neuropathy skin basal cell carcinoma colorectal carcinoma glioblastoma large cell medulloblastoma malignant colon neoplasm medulloblastoma ovarian cancer primitive neuroectodermal tumor xeroderma pigmentosum group G hepatocellular carcinoma lung adenocarcinoma malignant glioma