9QT9 | pdb_00009qt9

Cryo-EM structure of the core of the Arabidopsis thaliana UBR4/DI19/CALM1 complex

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth E], E [auth F]	PF13499	EF-hand domain pair (EF-hand_7)	EF-hand domain pair		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, F [auth D]	Protein DEHYDRATION-INDUCED 19	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
B [auth E], E [auth F]	Calmodulin-1	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding	-	cell periphery cellular anatomical structure plasma membrane membrane intracellular anatomical structure cytoplasm
A, D [auth B]	Auxin transport protein (BIG)	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	developmental process multicellular organismal process reproductive system development reproductive process shoot system morphogenesis developmental process involved in reproduction post-embryonic plant morphogenesis anatomical structure morphogenesis reproductive shoot system development multicellular organism development inflorescence morphogenesis anatomical structure development reproductive structure development shoot system development developmental process multicellular organismal process reproductive system development reproductive process shoot system morphogenesis developmental process involved in reproduction post-embryonic plant morphogenesis anatomical structure morphogenesis reproductive shoot system development multicellular organism development inflorescence morphogenesis anatomical structure development reproductive structure development shoot system development post-embryonic development inflorescence development system development response to light stimulus response to stimulus response to red or far red light photomorphogenesis response to radiation response to abiotic stimulus plant organ development root morphogenesis post-embryonic root morphogenesis post-embryonic plant organ morphogenesis plant organ morphogenesis post-embryonic root development lateral root morphogenesis anatomical structure formation involved in morphogenesis lateral root development post-embryonic plant organ development plant organ formation lateral root formation root development root system development response to auxin response to hormone response to endogenous stimulus response to chemical developmental growth unidimensional cell growth growth cellular process cell morphogenesis cell growth developmental growth involved in morphogenesis biological process involved in interspecies interaction between organisms response to other organism response to external stimulus response to fungus response to external biotic stimulus response to biotic stimulus auxin-activated signaling pathway cellular response to stimulus regulation of biological process regulation of cellular process signaling biological regulation hormone-mediated signaling pathway cellular response to auxin stimulus cell communication cellular response to endogenous stimulus cellular response to chemical stimulus signal transduction cellular response to hormone stimulus localization auxin polar transport transport regulation of hormone levels auxin transport hormone transport regulation of biological quality establishment of localization	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol cell-cell junction symplast anchoring junction cell junction plasmodesma

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, F [auth D]	IPR008598	Di19, zinc-binding domain	Domain
C, F [auth D]	IPR027935	Di19, C-terminal	Domain
C, F [auth D]	IPR033347	Di19	Family
B [auth E], E [auth F]	IPR050230	Calmodulin/Myosin light chain/Troponin C-like	Family
B [auth E], E [auth F]	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
B [auth E], E [auth F]	IPR002048	EF-hand domain	Domain
B [auth E], E [auth F]	IPR011992	EF-hand domain pair	Homologous Superfamily
A, D [auth B]	IPR043145	Zinc finger, ZZ-type superfamily	Homologous Superfamily
A, D [auth B]	IPR045189	E3 ubiquitin ligase UBR4-like	Family
A, D [auth B]	IPR016024	Armadillo-type fold	Homologous Superfamily
A, D [auth B]	IPR003126	Zinc finger, UBR-type	Domain
A, D [auth B]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, D [auth B]	IPR056530	E3 ubiquitin-protein ligase UBR4-like domain	Domain
A, D [auth B]	IPR025704	E3 ubiquitin ligase UBR4, C-terminal	Domain
A, D [auth B]	IPR011989	Armadillo-like helical	Homologous Superfamily
A, D [auth B]	IPR000433	Zinc finger, ZZ-type	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.