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 9PZV | pdb_00009pzv

Native GluN1/GluN2A in complex with 5F11 and 3D2 Fabs, local ATD dimer

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
F [auth K]FliD_Ce9pzvK1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: FliD_CECOD (v295.2)
E [auth J]Fer2e9pzvJ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Fer2ECOD (v295.2)
D [auth I]SPRYe9pzvI1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: SPRYECOD (v295.2)
C [auth H]Fer2e9pzvH1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Fer2ECOD (v295.2)
BFer2e9pzvB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Fer2ECOD (v295.2)
AFer2e9pzvA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Fer2ECOD (v295.2)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
F [auth K]Light ChainIGKV3 Kappaglutamate receptor ionotropic, nmda 2aSAbDab (2026-10-09)
E [auth J]Heavy ChainIGHV1 -glutamate receptor ionotropic, nmda 2aSAbDab (2026-10-09)
D [auth I]Light ChainIGKV8 Kappaglutamate receptor ionotropic, nmda 1SAbDab (2026-10-09)
C [auth H]Heavy ChainIGHV1 -glutamate receptor ionotropic, nmda 1SAbDab (2026-10-09)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain
PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F [auth K]Light chain of GluN2A-specific monoclonal Fab fragment, termed 3D2---
E [auth J]Heavy chain of GluN2A-specific monoclonal Fab fragment, termed 3D2---
D [auth I]Light chain of GluN1-specific monoclonal Fab fragment, termed 5F11---
C [auth H]Heavy chain of GluN1-specific monoclonal Fab fragment, termed 5F11---
Glutamate receptor ionotropic, NMDA 2A
Glutamate receptor ionotropic, NMDA 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR018884Glutamate [NMDA] receptor, epsilon subunit, C-terminalDomain
IPR028082Periplasmic binding protein-like IHomologous Superfamily
IPR001828Receptor, ligand binding regionDomain
IPR001320Ionotropic glutamate receptor, C-terminalDomain
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
IPR001508Ionotropic glutamate receptor, metazoaFamily
IPR015683Ionotropic glutamate receptorFamily
IPR028082Periplasmic binding protein-like IHomologous Superfamily
IPR001828Receptor, ligand binding regionDomain
IPR001320Ionotropic glutamate receptor, C-terminalDomain
IPR049873Glutamate [NMDA] receptor subunit 1-like, N-terminal LIVBP-like domainDomain
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
IPR001508Ionotropic glutamate receptor, metazoaFamily
IPR015683Ionotropic glutamate receptorFamily
IPR049872Glutamate [NMDA] receptor subunit 1-like, ligand-binding domainDomain