9NR9 | pdb_00009nr9

The structure of GluA1/A4 LBD-TMD with 2 TARPs

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth H]SCOP2B SuperfamilyClaudin-like 8092551 3002606 SCOP2B (2022-06-29)
A [auth F]SCOP2B SuperfamilyClaudin-like 8092551 3002606 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth B],
F [auth D]		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
D [auth B],
F [auth D]		PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain
C [auth A],
E [auth C]		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
C [auth A],
E [auth C]		PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain
A [auth F],
B [auth H]		PF00822PMP-22/EMP/MP20/Claudin family (PMP22_Claudin)PMP-22/EMP/MP20/Claudin family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth B],
F [auth D]		Isoform 2 of Glutamate receptor 4
C [auth A],
E [auth C]		Glutamate receptor 1
A [auth F],
B [auth H]		Voltage-dependent calcium channel gamma-2 subunit

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth B],
F [auth D]		IPR001320Ionotropic glutamate receptor, C-terminalDomain
D [auth B],
F [auth D]		IPR028082Periplasmic binding protein-like IHomologous Superfamily
D [auth B],
F [auth D]		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
D [auth B],
F [auth D]		IPR015683Ionotropic glutamate receptorFamily
D [auth B],
F [auth D]		IPR001508Ionotropic glutamate receptor, metazoaFamily
D [auth B],
F [auth D]		IPR001828Receptor, ligand binding regionDomain
C [auth A],
E [auth C]		IPR028082Periplasmic binding protein-like IHomologous Superfamily
C [auth A],
E [auth C]		IPR001828Receptor, ligand binding regionDomain
C [auth A],
E [auth C]		IPR001320Ionotropic glutamate receptor, C-terminalDomain
C [auth A],
E [auth C]		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
C [auth A],
E [auth C]		IPR001508Ionotropic glutamate receptor, metazoaFamily
C [auth A],
E [auth C]		IPR015683Ionotropic glutamate receptorFamily
A [auth F],
B [auth H]		IPR051072Voltage-dependent calcium channel gamma subunitFamily
A [auth F],
B [auth H]		IPR004031PMP-22/EMP/MP20/ClaudinFamily
A [auth F],
B [auth H]		IPR005422Voltage-dependent calcium channel, gamma-2 subunitFamily
A [auth F],
B [auth H]		IPR008368Voltage-dependent calcium channel, gamma subunitFamily