9M5U | pdb_00009m5u

Cryo-EM structure of Arabidopsis thaliana MET1 (aa:621-1534) in complex with hemimethylated DNA analog

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01426	BAH domain (BAH)	BAH domain	This domain has been called BAH (Bromo adjacent homology) domain and has also been called ELM1 and BAM (Bromo adjacent motif) domain. The function of this domain is unknown but may be involved in protein-protein interaction [3].	Domain
A	PF00145	C-5 cytosine-specific DNA methylase (DNA_methylase)	C-5 cytosine-specific DNA methylase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	DNA (cytosine-5)-methyltransferase 1	DNA binding binding nucleic acid binding transferase activity, transferring one-carbon groups transferase activity methyltransferase activity catalytic activity DNA (cytosine-5-)-methyltransferase activity DNA-methyltransferase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid S-adenosylmethionine-dependent methyltransferase activity chromatin binding	regulation of cellular process negative regulation of biological process cellular component organization cellular component biogenesis cellular component assembly chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process heterochromatin formation epigenetic regulation of gene expression regulation of cellular process negative regulation of biological process cellular component organization cellular component biogenesis cellular component assembly chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process heterochromatin formation epigenetic regulation of gene expression negative regulation of metabolic process biological regulation heterochromatin organization regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression constitutive heterochromatin formation biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process DNA methylation-dependent constitutive heterochromatin formation cellular process negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process DNA-mediated transformation horizontal gene transfer multicellular organismal process cytoskeleton-dependent cytokinesis reproductive process mitotic cytokinesis embryo development developmental process involved in reproduction mitotic cell cycle multicellular organism development fruit development embryo development ending in seed dormancy seed development anatomical structure development reproductive structure development post-embryonic development cell cycle system development cell cycle process developmental process reproductive system development zygote asymmetric cell division cytokinesis asymmetric cell division mitotic cell cycle process zygote asymmetric cytokinesis in embryo sac cell division methylation regulation of developmental process regulation of reproductive process negative regulation of post-embryonic development negative regulation of flower development reproductive shoot system development regulation of multicellular organismal process regulation of flower development regulation of multicellular organismal development negative regulation of developmental process regulation of shoot system development flower development regulation of post-embryonic development negative regulation of reproductive process shoot system development negative regulation of multicellular organismal process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
B [auth C]	DNA (5'-D(APCPTPTPAP(5CM)PGPGPAPAPGPG)-3')	-	-	-
C [auth D]	DNA (5'-D(CPCPTPTPCP(A1L82)PGPTPAPAPGPT)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR031303	DNA methylase, C-5 cytosine-specific, conserved site	Conserved Site
A	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
A	IPR043151	Bromo adjacent homology (BAH) domain superfamily	Homologous Superfamily
A	IPR050390	DNA Cytosine-5 Methyltransferase	Family
A	IPR001025	Bromo adjacent homology (BAH) domain	Domain
A	IPR017198	DNMT1-like	Unknown
A	IPR018117	DNA methylase, C-5 cytosine-specific, active site	Active Site
A	IPR001525	C-5 cytosine methyltransferase	Family
A	IPR022702	DNA (cytosine-5)-methyltransferase 1, replication foci domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.