The cryo-EM structure of the heterododecameric human Derlin-1/p97 complex
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| L [auth Y] | e9llkY1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: TCL1_MTCP1 | F: | ECOD (20:10:01) | |
| K [auth X] | e9llkX1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: TCL1_MTCP1 | F: | ECOD (20:10:01) | |
| H [auth U] | e9llkU1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: Galactose-binding domain-like | T: WD40 | F: | ECOD (20:10:01) | |
| G [auth Z] | e9llkZ1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: TCL1_MTCP1 | F: | ECOD (20:10:01) | |
| D [auth W] | e9llkW1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: TCL1_MTCP1 | F: | ECOD (20:10:01) | |
| C [auth V] | e9llkV1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: TCL1_MTCP1 | F: | ECOD (20:10:01) | |
| J [auth E] | e9llkE1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: TCL1_MTCP1 | F: | ECOD (20:10:01) | |
| I [auth D] | e9llkD1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: TCL1_MTCP1 | F: | ECOD (20:10:01) | |
| F [auth A] | e9llkA1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: Galactose-binding domain-like | T: WD40 | F: | ECOD (20:10:01) | |
| E [auth F] | e9llkF1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: TCL1_MTCP1 | F: | ECOD (20:10:01) | |
| B [auth C] | e9llkC1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: TCL1_MTCP1 | F: | ECOD (20:10:01) | |
| A [auth B] | e9llkB1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: TCL1_MTCP1 | F: | ECOD (20:10:01) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF04511 | Der1-like family (DER1) | Der1-like family | - | Family | |
| PF02933 | Cell division protein 48 (CDC48), domain 2 (CDC48_2) | Cell division protein 48 (CDC48), domain 2 | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain | |
| PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain | |
| PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain | |
| PF02359 | Cell division protein 48 (CDC48), N-terminal domain (CDC48_N) | Cell division protein 48 (CDC48), N-terminal domain | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR007599 | Derlin | Family | |
| IPR035952 | Rhomboid-like superfamily | Homologous Superfamily | |
| IPR003959 | ATPase, AAA-type, core | Domain | |
| IPR005938 | AAA ATPase, CDC48 family | Family | |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
| IPR029067 | CDC48 domain 2-like superfamily | Homologous Superfamily | |
| IPR003338 | CDC48, N-terminal subdomain | Domain | |
| IPR004201 | CDC48, domain 2 | Domain | |
| IPR009010 | Aspartate decarboxylase-like domain superfamily | Homologous Superfamily | |
| IPR003593 | AAA+ ATPase domain | Domain | |
| IPR041569 | AAA ATPase, AAA+ lid domain | Domain | |
| IPR050168 | AAA ATPase domain-containing protein | Family | |
| IPR003960 | ATPase, AAA-type, conserved site | Conserved Site |














