9LLK | pdb_00009llk

The cryo-EM structure of the heterododecameric human Derlin-1/p97 complex


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
L [auth Y]e9llkY1 A: ATPD N-terminal domain-likeX: N-terminal domain of the delta subunit of the F1F0-ATP synthaseH: N-terminal domain of the delta subunit of the F1F0-ATP synthaseT: TCL1_MTCP1F:ECOD (20:10:01)
K [auth X]e9llkX1 A: ATPD N-terminal domain-likeX: N-terminal domain of the delta subunit of the F1F0-ATP synthaseH: N-terminal domain of the delta subunit of the F1F0-ATP synthaseT: TCL1_MTCP1F:ECOD (20:10:01)
H [auth U]e9llkU1 A: ATPD N-terminal domain-likeX: N-terminal domain of the delta subunit of the F1F0-ATP synthaseH: Galactose-binding domain-likeT: WD40F:ECOD (20:10:01)
G [auth Z]e9llkZ1 A: ATPD N-terminal domain-likeX: N-terminal domain of the delta subunit of the F1F0-ATP synthaseH: N-terminal domain of the delta subunit of the F1F0-ATP synthaseT: TCL1_MTCP1F:ECOD (20:10:01)
D [auth W]e9llkW1 A: ATPD N-terminal domain-likeX: N-terminal domain of the delta subunit of the F1F0-ATP synthaseH: N-terminal domain of the delta subunit of the F1F0-ATP synthaseT: TCL1_MTCP1F:ECOD (20:10:01)
C [auth V]e9llkV1 A: ATPD N-terminal domain-likeX: N-terminal domain of the delta subunit of the F1F0-ATP synthaseH: N-terminal domain of the delta subunit of the F1F0-ATP synthaseT: TCL1_MTCP1F:ECOD (20:10:01)
J [auth E]e9llkE1 A: ATPD N-terminal domain-likeX: N-terminal domain of the delta subunit of the F1F0-ATP synthaseH: N-terminal domain of the delta subunit of the F1F0-ATP synthaseT: TCL1_MTCP1F:ECOD (20:10:01)
I [auth D]e9llkD1 A: ATPD N-terminal domain-likeX: N-terminal domain of the delta subunit of the F1F0-ATP synthaseH: N-terminal domain of the delta subunit of the F1F0-ATP synthaseT: TCL1_MTCP1F:ECOD (20:10:01)
F [auth A]e9llkA1 A: ATPD N-terminal domain-likeX: N-terminal domain of the delta subunit of the F1F0-ATP synthaseH: Galactose-binding domain-likeT: WD40F:ECOD (20:10:01)
E [auth F]e9llkF1 A: ATPD N-terminal domain-likeX: N-terminal domain of the delta subunit of the F1F0-ATP synthaseH: N-terminal domain of the delta subunit of the F1F0-ATP synthaseT: TCL1_MTCP1F:ECOD (20:10:01)
B [auth C]e9llkC1 A: ATPD N-terminal domain-likeX: N-terminal domain of the delta subunit of the F1F0-ATP synthaseH: N-terminal domain of the delta subunit of the F1F0-ATP synthaseT: TCL1_MTCP1F:ECOD (20:10:01)
A [auth B]e9llkB1 A: ATPD N-terminal domain-likeX: N-terminal domain of the delta subunit of the F1F0-ATP synthaseH: N-terminal domain of the delta subunit of the F1F0-ATP synthaseT: TCL1_MTCP1F:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF04511Der1-like family (DER1)Der1-like family- Family
PF02933Cell division protein 48 (CDC48), domain 2 (CDC48_2)Cell division protein 48 (CDC48), domain 2This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain
PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
PF02359Cell division protein 48 (CDC48), N-terminal domain (CDC48_N)Cell division protein 48 (CDC48), N-terminal domainThis domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the N-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Derlin-1
Transitional endoplasmic reticulum ATPase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR007599DerlinFamily
IPR035952Rhomboid-like superfamilyHomologous Superfamily
IPR003959ATPase, AAA-type, coreDomain
IPR005938AAA ATPase, CDC48 familyFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR029067CDC48 domain 2-like superfamilyHomologous Superfamily
IPR003338CDC48, N-terminal subdomainDomain
IPR004201CDC48, domain 2Domain
IPR009010Aspartate decarboxylase-like domain superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR041569AAA ATPase, AAA+ lid domainDomain
IPR050168AAA ATPase domain-containing proteinFamily
IPR003960ATPase, AAA-type, conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ9BUN8
PharosP55072