9JZQ | pdb_00009jzq

The glycoprotein E of Varicella-Zoster Virus in complex with WLL-1/WLL-28 Fab

External Resource: Annotation

SAbDab Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
E [auth D]	Light Chain	IGKV3	Kappa	envelope glycoprotein e	SAbDab (2025-12-19)
D [auth C]	Heavy Chain	IGHV5	-	envelope glycoprotein e	SAbDab (2025-12-19)
C [auth B]	Light Chain	IGLV3	Lambda	envelope glycoprotein e	SAbDab (2025-12-19)
B [auth A]	Heavy Chain	IGHV2	-	envelope glycoprotein e	SAbDab (2025-12-19)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E]	PF20418	Alphaherpesvirus glycoprotein E N-terminal (Herpes_gE_N)	Alphaherpesvirus glycoprotein E N-terminal	Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI) (Pfam:PF01688), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [1]. This entry represen ...	Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI) (Pfam:PF01688), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [1]. This entry represents the N-terminal domain of gE, which interacts with gI [2,3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth D]	WLL-28 Fab light chain	-	-	-
D [auth C]	WLL-28 Fab heavy chain	-	-	-
C [auth B]	WLL-1 Fab light chain	-	-	-
B [auth A]	WLL-1 Fab heavy chain	-	-	-
A [auth E]	Envelope glycoprotein E	protein binding binding enzyme binding	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell adhesion of symbiont to host	cellular anatomical structure membrane virion component virion membrane host intracellular membrane-bounded organelle host cellular component host intracellular part host cell membrane other organism part host cell cytoplasm part host intracellular organelle host cell endosome membrane host cell cytoplasm host cell part cellular anatomical structure membrane virion component virion membrane host intracellular membrane-bounded organelle host cellular component host intracellular part host cell membrane other organism part host cell cytoplasm part host intracellular organelle host cell endosome membrane host cell cytoplasm host cell part host cell endosome host intracellular region viral membrane viral envelope host cell Golgi membrane host cell Golgi apparatus host cell endomembrane system host cell plasma membrane host cell junction

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth E]	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A [auth E]	IPR046463	Envelope glycoprotein E, N-terminal	Domain
A [auth E]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A [auth E]	IPR003404	Envelope glycoprotein E, Fc-binding domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.