9JZ0 | pdb_00009jz0

portal-tail complex of DNA-ejected T7

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
LA [auth X]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
KA [auth W]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
JA [auth V]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
IA [auth U]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
HA [auth T]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
GA [auth S]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
FA [auth R]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
EA [auth Q]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
DA [auth P]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
CA [auth O]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
BA [auth N]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
AA [auth M]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth M], BA [auth N], CA [auth O], DA [auth P], EA [auth Q], AA [auth M], BA [auth N], CA [auth O], DA [auth P], EA [auth Q], FA [auth R], GA [auth S], HA [auth T], IA [auth U], JA [auth V], KA [auth W], LA [auth X]	PF17212	Tail tubular protein (Tube)	Tail tubular protein	-	Family
K [auth A], P [auth B], Q [auth C], R [auth D], S [auth E], K [auth A], P [auth B], Q [auth C], R [auth D], S [auth E], T [auth F], U [auth G], V [auth H], W [auth I], X [auth J], Y [auth K], Z [auth L]	PF12236	Bacteriophage head to tail connecting protein (Head-tail_con)	Bacteriophage head to tail connecting protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
GB [auth s], HB [auth t], IB [auth u], JB [auth v], KB [auth w], GB [auth s], HB [auth t], IB [auth u], JB [auth v], KB [auth w], LB [auth x]	Tail tubular protein gp12	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	virus tail, tube virus tail virion component
AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], FB [auth r], OA [auth a], PA [auth b], QA [auth c], RA [auth d], SA [auth e], TA [auth f], UA [auth g], VA [auth h], WA [auth i], XA [auth j], YA [auth k], ZA [auth l]	Tail fiber protein	identical protein binding protein binding binding	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host adhesion receptor-mediated virion attachment to host cell biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host	virus tail, fiber virus tail virion component
AA [auth M], BA [auth N], CA [auth O], DA [auth P], EA [auth Q], AA [auth M], BA [auth N], CA [auth O], DA [auth P], EA [auth Q], FA [auth R], GA [auth S], HA [auth T], IA [auth U], JA [auth V], KA [auth W], LA [auth X]	Tail tubular protein gp11	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	virus tail, tube virus tail virion component
K [auth A], P [auth B], Q [auth C], R [auth D], S [auth E], K [auth A], P [auth B], Q [auth C], R [auth D], S [auth E], T [auth F], U [auth G], V [auth H], W [auth I], X [auth J], Y [auth K], Z [auth L]	Portal protein	-	virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism biological process involved in interaction with host biological process involved in symbiotic interaction	protein-containing complex viral capsid virion component viral portal complex
C [auth 2], D [auth 3], E [auth 4], F [auth 5], G [auth 6], C [auth 2], D [auth 3], E [auth 4], F [auth 5], G [auth 6], H [auth 7], I [auth 8], J [auth 9], L [auth AA], M [auth AB], N [auth AC], O [auth AD]	Protein 6.7	-	-	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component
A [auth 0], B [auth 1], MA [auth Y], MB [auth y], NA [auth Z], A [auth 0], B [auth 1], MA [auth Y], MB [auth y], NA [auth Z], NB [auth z]	Internal virion protein gp14	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	virion component cellular anatomical structure membrane host cell plasma membrane host cellular component host cell part host cell membrane other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], FB [auth r], OA [auth a], PA [auth b], QA [auth c], RA [auth d], SA [auth e], TA [auth f], UA [auth g], VA [auth h], WA [auth i], XA [auth j], YA [auth k], ZA [auth l]	IPR022246	Bacteriophage T7, Gp17, C-terminal	Domain
AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], FB [auth r], OA [auth a], PA [auth b], QA [auth c], RA [auth d], SA [auth e], TA [auth f], UA [auth g], VA [auth h], WA [auth i], XA [auth j], YA [auth k], ZA [auth l]	IPR005604	Bacteriophage T7 tail fibre protein-like, N-terminal domain	Domain
AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], FB [auth r], OA [auth a], PA [auth b], QA [auth c], RA [auth d], SA [auth e], TA [auth f], UA [auth g], VA [auth h], WA [auth i], XA [auth j], YA [auth k], ZA [auth l]	IPR048388	Tail fibre protein gp37, trimerization region	Domain
AA [auth M], BA [auth N], CA [auth O], DA [auth P], EA [auth Q], AA [auth M], BA [auth N], CA [auth O], DA [auth P], EA [auth Q], FA [auth R], GA [auth S], HA [auth T], IA [auth U], JA [auth V], KA [auth W], LA [auth X]	IPR033767	Tail tubular protein Gp11	Family
K [auth A], P [auth B], Q [auth C], R [auth D], S [auth E], K [auth A], P [auth B], Q [auth C], R [auth D], S [auth E], T [auth F], U [auth G], V [auth H], W [auth I], X [auth J], Y [auth K], Z [auth L]	IPR038995	Portal protein, Caudovirales	Family
K [auth A], P [auth B], Q [auth C], R [auth D], S [auth E], K [auth A], P [auth B], Q [auth C], R [auth D], S [auth E], T [auth F], U [auth G], V [auth H], W [auth I], X [auth J], Y [auth K], Z [auth L]	IPR020991	Head-to-tail connector protein, podovirus-type	Family
C [auth 2], D [auth 3], E [auth 4], F [auth 5], G [auth 6], C [auth 2], D [auth 3], E [auth 4], F [auth 5], G [auth 6], H [auth 7], I [auth 8], J [auth 9], L [auth AA], M [auth AB], N [auth AC], O [auth AD]	IPR020134	Bacteriophage T7-like, protein 6.7	Family
A [auth 0], B [auth 1], MA [auth Y], MB [auth y], NA [auth Z], A [auth 0], B [auth 1], MA [auth Y], MB [auth y], NA [auth Z], NB [auth z]	IPR038996	Internal virion protein Gp14	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.