9J7L | pdb_00009j7l

Structure of AAV8 capsid in complex with receptor

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth o]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D [auth A]	PF13620	Carboxypeptidase regulatory-like domain (CarboxypepD_reg)	Carboxypeptidase regulatory-like domain		Domain
D [auth A]	PF00246	Zinc carboxypeptidase (Peptidase_M14)	Zinc carboxypeptidase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth A]	Carboxypeptidase D	peptidase activity catalytic activity, acting on a protein metallocarboxypeptidase activity hydrolase activity metallopeptidase activity exopeptidase activity catalytic activity metalloexopeptidase activity carboxypeptidase activity serine-type exopeptidase activity serine hydrolase activity serine-type carboxypeptidase activity serine-type peptidase activity cation binding peptidase activity catalytic activity, acting on a protein metallocarboxypeptidase activity hydrolase activity metallopeptidase activity exopeptidase activity catalytic activity metalloexopeptidase activity carboxypeptidase activity serine-type exopeptidase activity serine hydrolase activity serine-type carboxypeptidase activity serine-type peptidase activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	metabolic process cellular process peptide metabolic process primary metabolic process gene expression macromolecule biosynthetic process protein maturation biosynthetic process proteolysis protein processing protein metabolic process macromolecule metabolic process	cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle cell periphery plasma membrane
A [auth 5], B [auth 6], C [auth 7], E [auth c], F [auth o], A [auth 5], B [auth 6], C [auth 7], E [auth c], F [auth o], G [auth p]	Capsid protein	structural molecule activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth A]	IPR008969	Carboxypeptidase-like, regulatory domain superfamily	Homologous Superfamily
D [auth A]	IPR050753	Peptidase M14 domain-containing protein	Family
D [auth A]	IPR034224	Carboxypeptidase D, carboxypeptidase-like domain 2	Domain
D [auth A]	IPR033848	Carboxypeptidase D, carboxypeptidase-like domain 3	Domain
D [auth A]	IPR000834	Peptidase M14, carboxypeptidase A	Domain
A [auth 5], B [auth 6], C [auth 7], E [auth c], F [auth o], A [auth 5], B [auth 6], C [auth 7], E [auth c], F [auth o], G [auth p]	IPR013607	Phospholipase A2-like domain	Domain
A [auth 5], B [auth 6], C [auth 7], E [auth c], F [auth o], A [auth 5], B [auth 6], C [auth 7], E [auth c], F [auth o], G [auth p]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A [auth 5], B [auth 6], C [auth 7], E [auth c], F [auth o], A [auth 5], B [auth 6], C [auth 7], E [auth c], F [auth o], G [auth p]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A [auth 5], B [auth 6], C [auth 7], E [auth c], F [auth o], A [auth 5], B [auth 6], C [auth 7], E [auth c], F [auth o], G [auth p]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
D [auth A]	Pharos: O75976	pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia astrocytic tumor Crohn disease Gaucher disease invasive ductal breast carcinoma malignant ependymoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma progressive supranuclear palsy atypical teratoid rhabdoid tumor cystic fibrosis glioblastoma large cell medulloblastoma malignant mesothelioma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia astrocytic tumor Crohn disease Gaucher disease invasive ductal breast carcinoma malignant ependymoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma progressive supranuclear palsy atypical teratoid rhabdoid tumor cystic fibrosis glioblastoma large cell medulloblastoma malignant mesothelioma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm psoriasis breast cancer diabetes mellitus intellectual disability lung adenocarcinoma medulloblastoma pancreatic ductal adenocarcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.