9I5A | pdb_00009i5a

Crystal structure of wild type perlecan region 3 construct I876-V1272 construct including one laminin IV-like and four laminin EGF-like domains.

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00052	Laminin B (Domain IV) (Laminin_B)	Laminin B (Domain IV)		Domain
A, B	PF00053	Laminin EGF domain (EGF_laminin)	Laminin EGF domain	This family is like Pfam:PF00008 but has 8 conserved cysteines instead of six.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Basement membrane-specific heparan sulfate proteoglycan core protein	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein binding enzyme binding protease binding	developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development localization macromolecule localization intracellular protein localization blood vessel morphogenesis developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development localization macromolecule localization intracellular protein localization blood vessel morphogenesis tube development angiogenesis vasculature development circulatory system development anatomical structure morphogenesis tube morphogenesis anatomical structure formation involved in morphogenesis blood vessel development cellular component organization extracellular matrix organization cellular process cellular component organization or biogenesis extracellular structure organization external encapsulating structure organization endochondral ossification replacement ossification endochondral bone morphogenesis skeletal system development ossification skeletal system morphogenesis animal organ morphogenesis bone morphogenesis bone development embryonic organ morphogenesis chordate embryonic development embryonic morphogenesis embryo development embryo development ending in birth or egg hatching embryonic skeletal system development embryonic organ development embryonic skeletal system morphogenesis connective tissue development tissue development cartilage development involved in endochondral bone morphogenesis cartilage development heart development cardiac muscle tissue development striated muscle tissue development muscle tissue development cellular developmental process cell differentiation chondrocyte differentiation import into cell transport receptor-mediated endocytosis endocytosis establishment of localization vesicle-mediated transport	basement membrane cell periphery extracellular matrix cellular anatomical structure external encapsulating structure membrane-bounded organelle intracellular anatomical structure Golgi apparatus membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen Golgi lumen intracellular organelle basement membrane cell periphery extracellular matrix cellular anatomical structure external encapsulating structure membrane-bounded organelle intracellular anatomical structure Golgi apparatus membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen Golgi lumen intracellular organelle organelle lumen organelle cytoplasm extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR002172	Low-density lipoprotein (LDL) receptor class A repeat	Repeat
A, B	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A, B	IPR003598	Immunoglobulin subtype 2	Domain
A, B	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A, B	IPR013106	Immunoglobulin V-set domain	Domain
A, B	IPR036055	LDL receptor-like superfamily	Homologous Superfamily
A, B	IPR003599	Immunoglobulin domain subtype	Domain
A, B	IPR002049	Laminin-type EGF domain	Domain
A, B	IPR000742	EGF-like domain	Domain
A, B	IPR013098	Immunoglobulin I-set	Domain
A, B	IPR050958	Cell Adhesion and Cytoskeletal Organization	Family
A, B	IPR001791	Laminin G domain	Domain
A, B	IPR056863	Laminin/attractin/netrin-like, EGF domain	Domain
A, B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B	IPR001881	EGF-like calcium-binding domain	Domain
A, B	IPR023415	Low-density lipoprotein (LDL) receptor class A, conserved site	Conserved Site
A, B	IPR007110	Immunoglobulin-like domain	Domain
A, B	IPR000034	Laminin IV	Domain
A, B	IPR000082	SEA domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.