Annotations: 9I1R

Structure of the bicylindrical allophycocyanin core expressed during far-red light photoacclimation (FaRLiP)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	Globin-like	8098024	3000554	SCOP2B (2022-06-29)
IA [auth j]	SCOP2B Superfamily	Globin-like	8098024	3000554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
K	PBS_linker_poly	e9i1rK1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PBS_linker_poly	ECOD (v295.2)
J	Phycobilisome	e9i1rJ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: Hypothetical protein YqbG-like	F: Phycobilisome	ECOD (v295.2)
I	Phycobilisome	e9i1rI1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Phycobilisome	ECOD (v295.2)
C	Ice_binding	e9i1rC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ice_binding	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
RA [auth s], S	PF01383	CpcD/allophycocyanin linker domain (CpcD)	CpcD/allophycocyanin linker domain		Domain
JA [auth k], K	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
JA [auth k], K	PF00427	Phycobilisome Linker polypeptide (PBS_linker_poly)	Phycobilisome Linker polypeptide	-	Family
IA [auth j], J	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
HA [auth i], I	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
BA [auth c], C	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
AA [auth b], B, CA [auth d], D, EA [auth f], AA [auth b], B, CA [auth d], D, EA [auth f], F, GA [auth h], H, KA [auth l], L, MA [auth n], N, OA [auth p], P, QA [auth r], R, TA [auth u], U, VA [auth w], W, XA [auth y], Y	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
A, DA [auth e], E, FA [auth g], G, A, DA [auth e], E, FA [auth g], G, LA [auth m], M, NA [auth o], O, PA [auth q], Q, SA [auth t], T, UA [auth v], V, WA [auth x], X, Z [auth a]	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
RA [auth s], S	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
JA [auth k], K	Phycobiliprotein ApcE	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
IA [auth j], J	Allophycocyanin beta-18 subunit apoprotein	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
HA [auth i], I	Phycocyanin	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
BA [auth c], C	Phycocyanin	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
AA [auth b], B, CA [auth d], D, EA [auth f], AA [auth b], B, CA [auth d], D, EA [auth f], F, GA [auth h], H, KA [auth l], L, MA [auth n], N, OA [auth p], P, QA [auth r], R, TA [auth u], U, VA [auth w], W, XA [auth y], Y	Allophycocyanin beta subunit apoprotein	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
A, DA [auth e], E, FA [auth g], G, A, DA [auth e], E, FA [auth g], G, LA [auth m], M, NA [auth o], O, PA [auth q], Q, SA [auth t], T, UA [auth v], V, WA [auth x], X, Z [auth a]	Phycocyanin	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
RA [auth s], S	IPR011064	Allophycocyanin linker chain	Homologous Superfamily
RA [auth s], S	IPR011134	Allophycocyanin linker protein	Family
RA [auth s], S	IPR008213	CpcD-like domain	Domain
JA [auth k], K	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
JA [auth k], K	IPR001297	Phycobilisome linker domain	Domain
JA [auth k], K	IPR009050	Globin-like superfamily	Homologous Superfamily
JA [auth k], K	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily
JA [auth k], K	IPR012128	Phycobilisome, alpha/beta subunit	Family
IA [auth j], J	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
IA [auth j], J	IPR006245	Allophycocyanin, beta subunit	Family
IA [auth j], J	IPR009050	Globin-like superfamily	Homologous Superfamily
IA [auth j], J	IPR012128	Phycobilisome, alpha/beta subunit	Family
HA [auth i], I	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
HA [auth i], I	IPR009050	Globin-like superfamily	Homologous Superfamily
HA [auth i], I	IPR012128	Phycobilisome, alpha/beta subunit	Family
BA [auth c], C	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
BA [auth c], C	IPR009050	Globin-like superfamily	Homologous Superfamily
BA [auth c], C	IPR012128	Phycobilisome, alpha/beta subunit	Family
AA [auth b], B, CA [auth d], D, EA [auth f], AA [auth b], B, CA [auth d], D, EA [auth f], F, GA [auth h], H, KA [auth l], L, MA [auth n], N, OA [auth p], P, QA [auth r], R, TA [auth u], U, VA [auth w], W, XA [auth y], Y	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
AA [auth b], B, CA [auth d], D, EA [auth f], AA [auth b], B, CA [auth d], D, EA [auth f], F, GA [auth h], H, KA [auth l], L, MA [auth n], N, OA [auth p], P, QA [auth r], R, TA [auth u], U, VA [auth w], W, XA [auth y], Y	IPR006245	Allophycocyanin, beta subunit	Family
AA [auth b], B, CA [auth d], D, EA [auth f], AA [auth b], B, CA [auth d], D, EA [auth f], F, GA [auth h], H, KA [auth l], L, MA [auth n], N, OA [auth p], P, QA [auth r], R, TA [auth u], U, VA [auth w], W, XA [auth y], Y	IPR009050	Globin-like superfamily	Homologous Superfamily
AA [auth b], B, CA [auth d], D, EA [auth f], AA [auth b], B, CA [auth d], D, EA [auth f], F, GA [auth h], H, KA [auth l], L, MA [auth n], N, OA [auth p], P, QA [auth r], R, TA [auth u], U, VA [auth w], W, XA [auth y], Y	IPR012128	Phycobilisome, alpha/beta subunit	Family
A, DA [auth e], E, FA [auth g], G, A, DA [auth e], E, FA [auth g], G, LA [auth m], M, NA [auth o], O, PA [auth q], Q, SA [auth t], T, UA [auth v], V, WA [auth x], X, Z [auth a]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A, DA [auth e], E, FA [auth g], G, A, DA [auth e], E, FA [auth g], G, LA [auth m], M, NA [auth o], O, PA [auth q], Q, SA [auth t], T, UA [auth v], V, WA [auth x], X, Z [auth a]	IPR009050	Globin-like superfamily	Homologous Superfamily
A, DA [auth e], E, FA [auth g], G, A, DA [auth e], E, FA [auth g], G, LA [auth m], M, NA [auth o], O, PA [auth q], Q, SA [auth t], T, UA [auth v], V, WA [auth x], X, Z [auth a]	IPR012128	Phycobilisome, alpha/beta subunit	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
IA [auth j], J	MEN	Parent Component: ASN : AA0070 : N4-methyl-L-asparagine MOD:00079
AA [auth b], B, CA [auth d], D, EA [auth f], AA [auth b], B, CA [auth d], D, EA [auth f], F, GA [auth h], H, KA [auth l], L, MA [auth n], N, OA [auth p], P, QA [auth r], R, TA [auth u], U, VA [auth w], W, XA [auth y], Y	MEN	Parent Component: ASN : AA0070 , AA0070 : N4-methyl-L-asparagine MOD:00079 , N4-methyl-L-asparagine MOD:00079