9H90 | pdb_00009h90

Cryo-EM structure of the Vibrio natrigens 30S ribosomal subunit in complex with spectinomycin.

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I	30S ribosomal protein S9	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
H [auth d]	30S ribosomal protein S4	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
G [auth e]	30S ribosomal protein S5	RNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
F [auth f]	30S ribosomal protein S6	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
E [auth h]	30S ribosomal protein S8	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
D [auth o]	30S ribosomal protein S15	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
C [auth G]	Small ribosomal subunit protein uS7	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
B [auth C]	30S ribosomal protein S3	RNA binding binding nucleic acid binding mRNA binding rRNA binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
R [auth J]	30S ribosomal protein S10	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
Q [auth D]	30S ribosomal protein S14	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
P [auth k]	30S ribosomal protein S11	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
O [auth l]	30S ribosomal protein S12	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
N [auth p]	30S ribosomal protein S16	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
M [auth q]	30S ribosomal protein S17	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
L [auth r]	30S ribosomal protein S18	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
K [auth t]	30S ribosomal protein S20	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle ribonucleoprotein complex organelle membraneless organelle ribosome
J [auth a]	16S ribosomal RNA	-	-	-
A [auth u]	30S ribosomal protein S21	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I	IPR020574	Small ribosomal subunit protein uS9, conserved site	Conserved Site
I	IPR023035	Small ribosomal subunit protein uS9, bacteria/plastid	Family
I	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
I	IPR000754	Small ribosomal subunit protein uS9	Family
I	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
H [auth d]	IPR018079	Small ribosomal subunit protein uS4, conserved site	Conserved Site
H [auth d]	IPR002942	RNA-binding S4 domain	Domain
H [auth d]	IPR001912	Small ribosomal subunit protein uS4, N-terminal	Domain
H [auth d]	IPR036986	RNA-binding S4 domain superfamily	Homologous Superfamily
H [auth d]	IPR022801	Small ribosomal subunit protein uS4	Family
H [auth d]	IPR005709	Small ribosomal subunit protein uS4, bacteria	Family
G [auth e]	IPR000851	Small ribosomal subunit protein uS5	Family
G [auth e]	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
G [auth e]	IPR005712	Small ribosomal subunit protein uS5, bacteria	Family
G [auth e]	IPR013810	Small ribosomal subunit protein uS5, N-terminal	Domain
G [auth e]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
G [auth e]	IPR018192	Small ribosomal subunit protein uS5, N-terminal, conserved site	Conserved Site
G [auth e]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
F [auth f]	IPR020815	Small ribosomal subunit protein bS6, conserved site	Conserved Site
F [auth f]	IPR000529	Small ribosomal subunit protein bS6	Family
F [auth f]	IPR020814	Small ribosomal subunit protein bS6, plastid/chloroplast	Family
F [auth f]	IPR035980	Small ribosomal subunit protein bS6 superfamily	Homologous Superfamily
F [auth f]	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily
E [auth h]	IPR000630	Small ribosomal subunit protein uS8	Family
E [auth h]	IPR047863	Small ribosomal subunit protein uS8, conserved site	Conserved Site
E [auth h]	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
D [auth o]	IPR005290	Small ribosomal subunit protein uS15, bacteria	Family
D [auth o]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
D [auth o]	IPR000589	Small ribosomal subunit protein uS15	Family
C [auth G]	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
C [auth G]	IPR000235	Small ribosomal subunit protein uS7	Family
C [auth G]	IPR005717	Small ribosomal subunit protein uS7, bacteria/organella	Family
C [auth G]	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
C [auth G]	IPR023798	Small ribosomal subunit protein uS7 domain	Domain
B [auth C]	IPR005704	Small ribosomal subunit protein uS3, bacteria	Family
B [auth C]	IPR001351	Small ribosomal subunit protein uS3, C-terminal	Domain
B [auth C]	IPR057258	Small ribosomal subunit protein uS3	Family
B [auth C]	IPR009019	K homology domain superfamily, prokaryotic type	Homologous Superfamily
B [auth C]	IPR004087	K Homology domain	Domain
B [auth C]	IPR004044	K Homology domain, type 2	Domain
B [auth C]	IPR015946	K homology domain-like, alpha/beta	Homologous Superfamily
B [auth C]	IPR036419	Ribosomal protein S3, C-terminal domain superfamily	Homologous Superfamily
B [auth C]	IPR018280	Small ribosomal subunit protein uS3, conserved site	Conserved Site
R [auth J]	IPR001848	Small ribosomal subunit protein uS10	Family
R [auth J]	IPR027486	Small ribosomal subunit protein uS10 domain	Domain
R [auth J]	IPR036838	Small ribosomal subunit protein uS10 domain superfamily	Homologous Superfamily
R [auth J]	IPR018268	Small ribosomal subunit protein uS10, conserved site	Conserved Site
Q [auth D]	IPR001209	Small ribosomal subunit protein uS14	Family
Q [auth D]	IPR018271	Small ribosomal subunit protein uS14, conserved site	Conserved Site
Q [auth D]	IPR023036	Small ribosomal subunit protein uS14, bacteria/plastid	Family
P [auth k]	IPR001971	Small ribosomal subunit protein uS11	Family
P [auth k]	IPR036967	Small ribosomal subunit protein uS11 superfamily	Homologous Superfamily
P [auth k]	IPR019981	Small ribosomal subunit protein uS11, bacteria	Family
P [auth k]	IPR018102	Small ribosomal subunit protein uS11, conserved site	Conserved Site
O [auth l]	IPR006032	Small ribosomal subunit protein uS12	Family
O [auth l]	IPR005679	Ribosomal protein uS12, bacteria	Family
O [auth l]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
N [auth p]	IPR023803	Small ribosomal subunit protein bS16 domain superfamily	Homologous Superfamily
N [auth p]	IPR000307	Small ribosomal subunit protein bS16	Family
N [auth p]	IPR020592	Small ribosomal subunit protein bS16, conserved site	Conserved Site
M [auth q]	IPR019984	Small ribosomal subunit protein uS17, bacteria/chloroplast	Family
M [auth q]	IPR019979	Small ribosomal subunit protein uS17, conserved site	Conserved Site
M [auth q]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
M [auth q]	IPR000266	Small ribosomal subunit protein uS17	Family
L [auth r]	IPR001648	Small ribosomal subunit protein bS18	Family
L [auth r]	IPR018275	Small ribosomal subunit protein bS18, conserved site	Conserved Site
L [auth r]	IPR036870	Small ribosomal subunit protein bS18 superfamily	Homologous Superfamily
K [auth t]	IPR036510	Small ribosomal subunit protein bS20 superfamily	Homologous Superfamily
K [auth t]	IPR002583	Small ribosomal subunit protein bS20	Family
A [auth u]	IPR038380	Small ribosomal subunit protein bS21 superfamily	Homologous Superfamily
A [auth u]	IPR018278	Small ribosomal subunit protein bS21, conserved site	Conserved Site
A [auth u]	IPR001911	Small ribosomal subunit protein bS21	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 9H90 | pdb_00009h90

Cryo-EM structure of the Vibrio natrigens 30S ribosomal subunit in complex with spectinomycin.

External Resource: Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

9H90 | pdb_00009h90